View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9379_low_74 (Length: 204)

Name: NF9379_low_74
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9379_low_74
NF9379_low_74
[»] chr3 (36 HSPs)
chr3 (1-93)||(39610143-39610232)
chr3 (23-92)||(36691901-36691967)
chr3 (22-71)||(31462866-31462915)
chr3 (23-71)||(1075013-1075061)
chr3 (23-71)||(13702092-13702140)
chr3 (23-71)||(48652560-48652608)
chr3 (1-71)||(14585398-14585471)
chr3 (18-63)||(55090711-55090756)
chr3 (1-71)||(32080874-32080948)
chr3 (23-63)||(33637383-33637423)
chr3 (23-71)||(48400860-48400908)
chr3 (29-71)||(30156401-30156443)
chr3 (1-71)||(35174643-35174713)
chr3 (18-71)||(34960978-34961031)
chr3 (26-71)||(53155550-53155595)
chr3 (23-71)||(3456904-3456952)
chr3 (35-71)||(11819056-11819092)
chr3 (1-71)||(31270265-31270335)
chr3 (113-150)||(14585492-14585529)
chr3 (113-150)||(31270356-31270393)
chr3 (113-150)||(35174734-35174771)
chr3 (113-150)||(36691861-36691898)
chr3 (113-150)||(41868356-41868393)
chr3 (113-150)||(54239080-54239117)
chr3 (4-71)||(27189514-27189580)
chr3 (115-150)||(39610244-39610279)
chr3 (1-71)||(53402568-53402639)
chr3 (1-71)||(40013395-40013464)
chr3 (42-80)||(40883980-40884018)
chr3 (22-67)||(3312420-3312465)
chr3 (113-150)||(3456973-3457010)
chr3 (113-150)||(22484995-22485032)
chr3 (113-150)||(27189456-27189493)
chr3 (113-150)||(30156344-30156381)
chr3 (113-150)||(49628149-49628186)
chr3 (35-67)||(19861401-19861433)
[»] chr4 (52 HSPs)
chr4 (1-93)||(29922773-29922862)
chr4 (1-67)||(22757033-22757099)
chr4 (1-89)||(31521921-31522006)
chr4 (1-71)||(39837533-39837603)
chr4 (19-71)||(6911637-6911689)
chr4 (26-93)||(29268870-29268934)
chr4 (23-71)||(7084167-7084215)
chr4 (23-71)||(24568825-24568873)
chr4 (23-93)||(24825610-24825677)
chr4 (23-71)||(27394791-27394839)
chr4 (23-71)||(30201999-30202047)
chr4 (1-71)||(43244493-43244563)
chr4 (1-71)||(478123-478190)
chr4 (23-71)||(8712491-8712539)
chr4 (23-71)||(44757154-44757202)
chr4 (1-71)||(7083928-7083997)
chr4 (23-87)||(26674333-26674394)
chr4 (113-150)||(7060354-7060391)
chr4 (26-71)||(7861317-7861362)
chr4 (113-150)||(13965590-13965627)
chr4 (22-71)||(20400015-20400064)
chr4 (113-150)||(22757124-22757161)
chr4 (113-150)||(24825679-24825716)
chr4 (113-150)||(31522012-31522049)
chr4 (18-71)||(39523374-39523427)
chr4 (113-150)||(43244435-43244472)
chr4 (113-150)||(44757096-44757133)
chr4 (27-71)||(626659-626703)
chr4 (23-89)||(11210410-11210473)
chr4 (23-67)||(25658128-25658172)
chr4 (1-71)||(394386-394450)
chr4 (25-71)||(5814310-5814356)
chr4 (29-71)||(7060291-7060333)
chr4 (3-71)||(24611911-24611976)
chr4 (112-150)||(26674401-26674439)
chr4 (113-150)||(6881986-6882023)
chr4 (113-150)||(7083870-7083907)
chr4 (113-150)||(7861259-7861296)
chr4 (113-150)||(24100169-24100206)
chr4 (113-150)||(24568767-24568804)
chr4 (117-150)||(24611853-24611886)
chr4 (3-71)||(26742575-26742646)
chr4 (19-68)||(28837034-28837083)
chr4 (113-150)||(29268831-29268868)
chr4 (113-150)||(29922867-29922904)
chr4 (113-150)||(43493341-43493378)
chr4 (113-150)||(50801247-50801284)
chr4 (113-150)||(51152155-51152192)
chr4 (113-149)||(394329-394365)
chr4 (113-145)||(22049464-22049496)
chr4 (113-149)||(39523439-39523475)
chr4 (23-67)||(42197514-42197558)
[»] chr5 (32 HSPs)
chr5 (1-71)||(29097728-29097798)
chr5 (1-75)||(17096350-17096421)
chr5 (1-71)||(17699492-17699562)
chr5 (23-71)||(17331289-17331337)
chr5 (21-71)||(28040588-28040638)
chr5 (1-93)||(39531495-39531583)
chr5 (21-75)||(981133-981187)
chr5 (3-71)||(7771918-7771983)
chr5 (23-71)||(6281005-6281053)
chr5 (23-71)||(6635210-6635258)
chr5 (1-71)||(43493811-43493881)
chr5 (113-150)||(3740387-3740424)
chr5 (113-150)||(17096293-17096330)
chr5 (113-150)||(32347768-32347805)
chr5 (23-67)||(3740319-3740363)
chr5 (113-149)||(17699583-17699619)
chr5 (23-71)||(20483147-20483195)
chr5 (23-71)||(32347827-32347874)
chr5 (23-67)||(33164584-33164628)
chr5 (32-66)||(23882233-23882267)
chr5 (113-150)||(6635280-6635317)
chr5 (113-150)||(12891706-12891743)
chr5 (113-150)||(17331358-17331395)
chr5 (26-59)||(17687177-17687210)
chr5 (113-150)||(27241094-27241131)
chr5 (113-150)||(28040659-28040696)
chr5 (113-150)||(39179882-39179919)
chr5 (113-150)||(39531457-39531494)
chr5 (113-150)||(42609174-42609211)
chr5 (113-150)||(43493902-43493939)
chr5 (114-150)||(178160-178196)
chr5 (23-71)||(26295170-26295218)
[»] scaffold0536 (2 HSPs)
scaffold0536 (1-93)||(2842-2928)
scaffold0536 (113-150)||(2932-2969)
[»] scaffold0312 (2 HSPs)
scaffold0312 (23-93)||(6098-6165)
scaffold0312 (113-150)||(6167-6204)
[»] chr2 (47 HSPs)
chr2 (23-93)||(13879107-13879174)
chr2 (23-93)||(14019232-14019299)
chr2 (1-71)||(12704626-12704696)
chr2 (22-71)||(7073060-7073109)
chr2 (23-71)||(11937971-11938019)
chr2 (23-71)||(12891201-12891249)
chr2 (23-93)||(27095666-27095733)
chr2 (23-93)||(32015181-32015248)
chr2 (23-71)||(38535417-38535465)
chr2 (19-71)||(43474240-43474292)
chr2 (1-71)||(9978781-9978851)
chr2 (21-93)||(44942244-44942313)
chr2 (22-71)||(5754248-5754297)
chr2 (1-71)||(22597072-22597144)
chr2 (23-71)||(33012038-33012086)
chr2 (18-71)||(4604419-4604472)
chr2 (26-71)||(25067816-25067861)
chr2 (23-71)||(9690085-9690133)
chr2 (23-93)||(15919835-15919902)
chr2 (23-71)||(28262005-28262052)
chr2 (32-93)||(41797585-41797643)
chr2 (29-71)||(20561244-20561286)
chr2 (1-71)||(31908928-31908998)
chr2 (113-150)||(17268178-17268215)
chr2 (113-150)||(27095735-27095772)
chr2 (114-150)||(4732102-4732138)
chr2 (35-71)||(17268236-17268272)
chr2 (115-150)||(13879060-13879095)
chr2 (115-150)||(14019185-14019220)
chr2 (24-67)||(36867970-36868013)
chr2 (113-148)||(43474184-43474219)
chr2 (113-150)||(4426712-4426749)
chr2 (113-150)||(4604361-4604398)
chr2 (113-150)||(9690027-9690064)
chr2 (113-150)||(12704717-12704754)
chr2 (113-146)||(13740718-13740751)
chr2 (113-150)||(15919904-15919941)
chr2 (113-150)||(22597165-22597202)
chr2 (113-150)||(33012107-33012144)
chr2 (113-150)||(34416815-34416852)
chr2 (23-68)||(34963180-34963225)
chr2 (113-150)||(35333535-35333572)
chr2 (113-150)||(38535359-38535396)
chr2 (113-150)||(44942315-44942352)
chr2 (9-89)||(34470912-34470990)
chr2 (113-149)||(34963121-34963157)
chr2 (35-71)||(38384554-38384590)
[»] chr1 (33 HSPs)
chr1 (23-93)||(424384-424451)
chr1 (23-76)||(45193733-45193786)
chr1 (23-71)||(27534660-27534708)
chr1 (23-71)||(33487142-33487190)
chr1 (26-93)||(12871585-12871649)
chr1 (23-80)||(45750439-45750496)
chr1 (23-71)||(28678242-28678290)
chr1 (23-89)||(42490854-42490917)
chr1 (5-71)||(33939114-33939180)
chr1 (23-71)||(7995672-7995721)
chr1 (23-68)||(17347560-17347605)
chr1 (26-71)||(32784072-32784117)
chr1 (23-71)||(18343575-18343623)
chr1 (23-66)||(3232749-3232792)
chr1 (29-90)||(14265251-14265309)
chr1 (1-71)||(29205221-29205294)
chr1 (113-150)||(424345-424382)
chr1 (23-64)||(5832204-5832245)
chr1 (113-150)||(7995614-7995651)
chr1 (22-71)||(20411533-20411582)
chr1 (23-64)||(29726692-29726732)
chr1 (113-146)||(33487088-33487121)
chr1 (113-150)||(37822399-37822436)
chr1 (113-150)||(45193680-45193717)
chr1 (23-68)||(47551106-47551151)
chr1 (26-89)||(42276321-42276380)
chr1 (113-150)||(3232818-3232855)
chr1 (113-150)||(14265314-14265351)
chr1 (26-67)||(15791604-15791645)
chr1 (113-150)||(32784138-32784175)
chr1 (113-150)||(44517177-44517214)
chr1 (23-71)||(4882471-4882519)
chr1 (23-71)||(13488648-13488695)
[»] chr7 (53 HSPs)
chr7 (1-68)||(15674740-15674807)
chr7 (23-93)||(24988448-24988514)
chr7 (1-68)||(17473838-17473905)
chr7 (1-68)||(17579309-17579376)
chr7 (23-93)||(3266343-3266410)
chr7 (26-93)||(28665005-28665069)
chr7 (23-75)||(41287918-41287970)
chr7 (23-71)||(46026141-46026189)
chr7 (1-67)||(45457672-45457741)
chr7 (22-71)||(22747619-22747668)
chr7 (22-71)||(48304507-48304556)
chr7 (1-68)||(17509318-17509388)
chr7 (1-68)||(17543826-17543896)
chr7 (1-64)||(27535395-27535458)
chr7 (3-67)||(5684306-5684370)
chr7 (3-67)||(5709356-5709420)
chr7 (23-71)||(6667356-6667404)
chr7 (23-71)||(11832979-11833027)
chr7 (23-67)||(42644637-42644681)
chr7 (29-69)||(45482031-45482071)
chr7 (23-69)||(36579426-36579472)
chr7 (29-71)||(40761556-40761598)
chr7 (113-150)||(21603492-21603529)
chr7 (113-150)||(28664966-28665003)
chr7 (113-150)||(32740783-32740820)
chr7 (113-150)||(41287988-41288025)
chr7 (113-150)||(42644706-42644743)
chr7 (1-68)||(1281252-1281322)
chr7 (115-150)||(3266420-3266455)
chr7 (1-71)||(9785254-9785326)
chr7 (32-67)||(21990631-21990666)
chr7 (22-68)||(4621482-4621528)
chr7 (113-150)||(5684395-5684432)
chr7 (113-150)||(5709445-5709482)
chr7 (113-150)||(9785347-9785384)
chr7 (18-51)||(10094428-10094461)
chr7 (113-150)||(10094471-10094508)
chr7 (113-150)||(11833049-11833086)
chr7 (113-150)||(15674666-15674703)
chr7 (113-150)||(17473777-17473814)
chr7 (113-150)||(17509258-17509295)
chr7 (113-150)||(17543919-17543956)
chr7 (113-150)||(17579400-17579437)
chr7 (23-68)||(21603424-21603469)
chr7 (113-150)||(21990692-21990729)
chr7 (113-150)||(22747562-22747599)
chr7 (23-68)||(32740714-32740758)
chr7 (113-150)||(39533029-39533066)
chr7 (113-150)||(45457610-45457647)
chr7 (113-150)||(45482094-45482131)
chr7 (23-67)||(10574342-10574386)
chr7 (23-71)||(39533087-39533134)
chr7 (23-67)||(42603885-42603929)
[»] chr8 (27 HSPs)
chr8 (23-93)||(10147907-10147974)
chr8 (1-71)||(24791288-24791358)
chr8 (23-71)||(7583884-7583932)
chr8 (23-71)||(24699791-24699839)
chr8 (18-68)||(2025332-2025382)
chr8 (23-71)||(11161843-11161891)
chr8 (2-71)||(1810339-1810405)
chr8 (23-65)||(30027040-30027082)
chr8 (26-71)||(37612617-37612662)
chr8 (23-71)||(14600818-14600866)
chr8 (23-71)||(31407868-31407916)
chr8 (23-71)||(39067809-39067857)
chr8 (23-71)||(41361693-41361741)
chr8 (32-71)||(30027000-30027039)
chr8 (23-66)||(31308103-31308146)
chr8 (113-150)||(9501620-9501657)
chr8 (113-150)||(31308178-31308215)
chr8 (23-71)||(31202419-31202467)
chr8 (1-71)||(9501528-9501598)
chr8 (113-150)||(2234532-2234569)
chr8 (113-150)||(10147977-10148014)
chr8 (113-150)||(10338884-10338921)
chr8 (113-150)||(12329656-12329693)
chr8 (113-150)||(23971156-23971193)
chr8 (113-150)||(37128548-37128585)
chr8 (113-150)||(37612683-37612720)
chr8 (113-150)||(39067751-39067788)
[»] chr6 (19 HSPs)
chr6 (1-71)||(15590191-15590261)
chr6 (23-71)||(6419970-6420018)
chr6 (23-71)||(12481482-12481530)
chr6 (23-71)||(23654211-23654259)
chr6 (1-68)||(4084956-4085024)
chr6 (1-71)||(8693772-8693842)
chr6 (23-76)||(4921989-4922042)
chr6 (26-71)||(21507920-21507965)
chr6 (23-71)||(29927491-29927539)
chr6 (113-150)||(6419912-6419949)
chr6 (23-71)||(2304922-2304970)
chr6 (23-67)||(35220019-35220063)
chr6 (22-68)||(6296367-6296413)
chr6 (22-68)||(6303177-6303223)
chr6 (113-150)||(4921935-4921972)
chr6 (113-150)||(14783225-14783262)
chr6 (113-150)||(15590133-15590170)
chr6 (113-150)||(21507862-21507899)
chr6 (113-150)||(31937473-31937510)
[»] scaffold1379 (3 HSPs)
scaffold1379 (1-71)||(1198-1271)
scaffold1379 (113-150)||(5-42)
scaffold1379 (113-150)||(1140-1177)
[»] scaffold0294 (1 HSPs)
scaffold0294 (23-67)||(4182-4226)
[»] scaffold0155 (2 HSPs)
scaffold0155 (23-71)||(35043-35091)
scaffold0155 (113-150)||(35112-35149)
[»] scaffold0056 (1 HSPs)
scaffold0056 (113-150)||(74194-74231)
[»] scaffold1350 (1 HSPs)
scaffold1350 (21-71)||(1534-1584)
[»] scaffold0321 (1 HSPs)
scaffold0321 (113-150)||(7178-7215)
[»] scaffold0121 (1 HSPs)
scaffold0121 (23-71)||(13361-13408)
[»] scaffold0001 (1 HSPs)
scaffold0001 (27-71)||(404370-404414)


Alignment Details
Target: chr3 (Bit Score: 63; Significance: 1e-27; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 39610143 - 39610232
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    |||||||||||  ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||   |||||||||||||||||||||    
T  39610143 tcaaaccctagacgtcacccctttcttcttcttcttgtcagaggggtgatttatggtcaattttgaccc---aataatcacccctccgagttg 39610232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 92
Target Start/End: Complemental strand, 36691967 - 36691901
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagtt 92  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||   || |||||||||||||||||    
T  36691967 ttcttctccttcttgtcagaggggtgatttagggtcaattttgaccc---aaaaatcacccctccgagtt 36691901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 31462915 - 31462866
Alignment:
Q  22 tttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31462915 tttcttcttcttcttttcagaggggtgatttagggtcaattttgacccaa 31462866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 1075061 - 1075013
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1075061 ttcttcttcttcttgtcagaggggtgatttatggtcaattttgacccaa 1075013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 13702140 - 13702092
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13702140 ttcttcttcttcttttcagaggggtgatttagggtcaattttgacccaa 13702092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 48652608 - 48652560
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  48652608 ttcttcttcttcttgtcagaggggtgatttagggtcaactttgacccaa 48652560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 14585398 - 14585471
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttc---ttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||| ||||||| |||||||   |||||||| ||||||||||||||||| ||||||||||||||||    
T  14585398 tcaaaccctagtcgtcgcccttttcttcgtcttcttcttttcagaggggtgatttagagtcaattttgacccaa 14585471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 55090756 - 55090711
Alignment:
Q  18 cccctttcttcttcttcttgtcagaggggtgatttagggtcaattt 63  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  55090756 cccctttcttcttcttcttgtcagaggggtgatttagggttaattt 55090711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 32080948 - 32080874
Alignment:
Q  1 tcaaaccctagttgtcgcccc-tttcttcttcttc---ttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||  |||||||| |||||||||||||   |||||||| ||||||||||||||||||||||||||||    
T  32080948 tcaaaccctagccgtcgccccatttcttcttcttcttgttgtcagatgggtgatttagggtcaattttgacccaa 32080874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 33637383 - 33637423
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattt 63  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  33637383 ttcttcttcttcttgtcagaggggtgatttagggtcaattt 33637423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 48400860 - 48400908
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  48400860 ttcttcttcttctttttagaggggtgatttagggtcaattttgacccaa 48400908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 30156443 - 30156401
Alignment:
Q  29 ttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  30156443 ttcttcttttcagaggggtgatttagggtcaattttgacccaa 30156401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 35174643 - 35174713
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||| ||| ||| ||||||||||||||| ||| |||||| ||| ||||||||||| |||||||    
T  35174643 tcaaaccctagtcgtcacccttttcttcttcttcttttcataggggttattaagggtcaatttcgacccaa 35174713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 34961031 - 34960978
Alignment:
Q  18 cccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||| ||| |||||||| |||||||||||| |||||||||||||||||||||    
T  34961031 ccccttactttttcttcttttcagaggggtgacttagggtcaattttgacccaa 34960978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 53155595 - 53155550
Alignment:
Q  26 ttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||    
T  53155595 ttcttcttctttttagaggggtgatttagggtcaattttgacccaa 53155550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 3456904 - 3456952
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| |||||||||||||||| |||||||||||| ||||    
T  3456904 ttcttcttcttcttttcagaggggtgatttatggtcaattttgatccaa 3456952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 11819056 - 11819092
Alignment:
Q  35 ttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||||||||||||||||||||||||||    
T  11819056 ttgtcagaggggtgatttagggtcaattttgacccaa 11819092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 31270265 - 31270335
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||| ||||| |||| ||  ||||||||| ||||| | ||| ||||||||||||||||||||||||||||    
T  31270265 tcaaatcctagatgtcaccattttcttcttattctttttagatgggtgatttagggtcaattttgacccaa 31270335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 14585492 - 14585529
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  14585492 ttttccttctatcctaattgaataagtgatttcacata 14585529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 31270356 - 31270393
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  31270356 ttttccttctatcctaattgaataagtgatttcacata 31270393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 35174734 - 35174771
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  35174734 ttttccttctatcctaattgaataagtgatttcacata 35174771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 36691898 - 36691861
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  36691898 ttttccttctatcctaattgaataagtgatttcacata 36691861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 41868393 - 41868356
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  41868393 ttttccttctatcctaattgaataagtgatttcacata 41868356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 54239117 - 54239080
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  54239117 ttttccttctatcctaattgaataagtgatttcacata 54239080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 27189580 - 27189514
Alignment:
Q  4 aaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||  ||| |||||||||||||||  |||| ||||||||||||||| ||||||||||| ||||    
T  27189580 aaccctagccgtcacccctttcttcttctctttgt-agaggggtgatttagagtcaattttgatccaa 27189514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 150
Target Start/End: Original strand, 39610244 - 39610279
Alignment:
Q  115 ttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||| |||||||||||||    
T  39610244 ttccttctatcctaattgaataagtgatttcacata 39610279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 53402568 - 53402639
Alignment:
Q  1 tcaaaccctagttgtcgccccttt-cttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||| ||| ||||||| |||||||||||| | | | | |||||||| |||||||||||||||||    
T  53402568 tcaaaccctagtcgtcaccccttttcttcttcttctttttaaatgagtgatttaaggtcaattttgacccaa 53402639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 40013464 - 40013395
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||| |||| ||| ||  ||||||||||||||| ||||| || |||||||| ||||||||||||||||    
T  40013464 tcaaaccatagtcgtcaccattttcttcttcttcttttcagatgg-tgatttagtgtcaattttgacccaa 40013395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 80
Target Start/End: Complemental strand, 40884018 - 40883980
Alignment:
Q  42 aggggtgatttagggtcaattttgacccaataataatca 80  Q
    |||||||||||||||||||||||||||||| ||| ||||    
T  40884018 aggggtgatttagggtcaattttgacccaaaaatcatca 40883980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 3312420 - 3312465
Alignment:
Q  22 tttcttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    ||||||||| || |||||||| |||||||||| |||||||||||||    
T  3312420 tttcttcttatttttgtcagaagggtgatttaaggtcaattttgac 3312465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 3456973 - 3457010
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  3456973 ttttccttctatcctaattgaataagtgatttaacata 3457010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 22484995 - 22485032
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  22484995 ttttccttctatcctaattgaataagtgatttcgcata 22485032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 27189493 - 27189456
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| || ||||||||||    
T  27189493 ttttccttctatcctaattgaataagtaatttcacata 27189456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 30156381 - 30156344
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  30156381 ttttccttttatcctaattgaataagtgatttcacata 30156344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 49628186 - 49628149
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  49628186 ttttccttctatcctagttgaataagtgatttcacata 49628149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 67
Target Start/End: Complemental strand, 19861433 - 19861401
Alignment:
Q  35 ttgtcagaggggtgatttagggtcaattttgac 67  Q
    ||||||||| |||||||||||||||||||||||    
T  19861433 ttgtcagagaggtgatttagggtcaattttgac 19861401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 29922773 - 29922862
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    |||||||||||  ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||| |||||    
T  29922773 tcaaaccctagccgtcacccctttcttcttcttcttgtcagagaggtgatttagggtcaattttgacc---taataatcacccctccaagttg 29922862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22757033 - 22757099
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    |||||||||||  ||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  22757033 tcaaaccctagccgtcacccttttcttcttcttcttttcagaggggtgatttagggtcaattttgac 22757099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 31521921 - 31522006
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccga 89  Q
    |||||||||||| || |||| |||||| |||||||| ||| |||||||||||||||||||||||||||   ||| ||||||||||||||    
T  31521921 tcaaaccctagtcgtggcccttttcttgttcttcttttcaaaggggtgatttagggtcaattttgacc---taaaaatcacccctccga 31522006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 39837533 - 39837603
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||| ||||| ||| ||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  39837533 tcaaacactagtcgtcacccttttcttcttcttcttttcagaggggtgatttagcgtcaattttgacccaa 39837603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 6911637 - 6911689
Alignment:
Q  19 ccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  6911637 ccctttcttcttcttcttgttagaggggtgatttagggtcaattttgatccaa 6911689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 29268934 - 29268870
Alignment:
Q  26 ttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    |||||||||||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||||    
T  29268934 ttcttcttcttgtcagaggggtgatttaaggtcaattttgaccc--taa-aatcacccctccgagttg 29268870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 7084167 - 7084215
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  7084167 ttcttcttcttgttgtcagaggggtgatttaggttcaattttgacccaa 7084215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 24568873 - 24568825
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  24568873 ttcttcttcttcttttcagaggggtgatttagggtgaattttgacccaa 24568825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 24825610 - 24825677
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    |||||||||||||||| |||||||||||||||| ||||||||||||   ||| |||||| |||||||||||    
T  24825610 ttcttcttcttcttgttagaggggtgatttaggatcaattttgacc---taaaaatcactcctccgagttg 24825677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 27394791 - 27394839
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  27394791 ttcttcttcttcttttcacaggggtgatttagggtcaattttgacccaa 27394839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 30201999 - 30202047
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  30201999 ttcttcttcttcttgtcagaggggtgatttaaggtcaattttgatccaa 30202047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 43244563 - 43244493
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||  |||  || |||||||||||| || | ||||||||||||||||||||||||||||||||    
T  43244563 tcaaaccctagccgtcatccttttcttcttcttttttttagaggggtgatttagggtcaattttgacccaa 43244493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 478190 - 478123
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||  ||| |||||||||||||||| ||   |||||||||||||| |||||||||||||||||    
T  478190 tcaaaccctagccgtcacccctttcttcttcttttt---agaggggtgatttatggtcaattttgacccaa 478123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 8712491 - 8712539
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| | | ||||||||||||||||||||||||||||||    
T  8712491 ttcttcttcttctttttacaggggtgatttagggtcaattttgacccaa 8712539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 44757202 - 44757154
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  44757202 ttctccttcttcttatcagaggggtgatttaaggtcaattttgacccaa 44757154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 7083997 - 7083928
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||| ||| ||| ||||||||||||||| ||||| || | |||||||||||||||||| ||||    
T  7083997 tcaaaccctagtcgtcaccc-tttcttcttcttcttttcagatggataatttagggtcaattttgatccaa 7083928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 87
Target Start/End: Original strand, 26674333 - 26674394
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctcc 87  Q
    |||||||||||||| ||||| |||||||||||| ||||||||||||   ||| ||||||||||||    
T  26674333 ttcttcttcttcttttcagatgggtgatttaggatcaattttgacc---taaaaatcacccctcc 26674394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 7060354 - 7060391
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7060354 ttttccttctatcctaattgaataagtgatttcacata 7060391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 7861362 - 7861317
Alignment:
Q  26 ttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||||||||| |||||||||||  |||||||||||||||    
T  7861362 ttcttcttcttgtcagatgggtgatttagaatcaattttgacccaa 7861317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 13965590 - 13965627
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  13965590 ttttccttctatcctaattgaataagtgatttcacata 13965627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 20400064 - 20400015
Alignment:
Q  22 tttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||||||| | ||| ||| ||||||||||||||||||||||||    
T  20400064 tttcttcttcttctttttagaagggcgatttagggtcaattttgacccaa 20400015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 22757124 - 22757161
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  22757124 ttttccttctatcctaattgaataagtgatttcacata 22757161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 24825679 - 24825716
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  24825679 ttttccttctatcctaattgaataagtgatttcacata 24825716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 31522012 - 31522049
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  31522012 ttttccttctatcctaattgaataagtgatttcacata 31522049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 39523374 - 39523427
Alignment:
Q  18 cccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||| |||||||  | ||||||||||||||| ||||||||||||||||    
T  39523374 cccctttctttttcttctatttagaggggtgatttagagtcaattttgacccaa 39523427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 43244472 - 43244435
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  43244472 ttttccttctatcctaattgaataagtgatttcacata 43244435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 44757133 - 44757096
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  44757133 ttttccttctatcctaattgaataagtgatttcacata 44757096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 626703 - 626659
Alignment:
Q  27 tcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||| |||||||||||||||||||  |||||||||||||    
T  626703 tcttcttcttttcagaggggtgatttagggctaattttgacccaa 626659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 11210473 - 11210410
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccga 89  Q
    ||||||||||||||   |||||||||||||||||||||||||| ||   ||| ||||||||||||||    
T  11210473 ttcttcttcttctttgtagaggggtgatttagggtcaattttgccc---taaaaatcacccctccga 11210410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 25658128 - 25658172
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    |||||||||||||| | |||||||||||||||||| |||||||||    
T  25658128 ttcttcttcttctttttagaggggtgatttagggttaattttgac 25658172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 394450 - 394386
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||||| ||| ||||||||| ||       |||||||||||||||||||||||||||||||    
T  394450 tcaaaccctagttgtcacccttttcttctttttg------gaggggtgatttagggtcaattttgacccaa 394386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 5814310 - 5814356
Alignment:
Q  25 cttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| || | |||||||||||||||||||||| ||||    
T  5814310 cttcttcttcttgttagggaggtgatttagggtcaattttgatccaa 5814356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 7060291 - 7060333
Alignment:
Q  29 ttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||| |||||||||| |||||||||||||||| ||||||    
T  7060291 ttcttcttttcagaggggtaatttagggtcaattttaacccaa 7060333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 24611976 - 24611911
Alignment:
Q  3 aaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||| |||| ||||| | |||||||||||||||   |||||||||||||| ||||||||| |||||||    
T  24611976 aaaccttagtcgtcgctcatttcttcttcttctt---agaggggtgatttatggtcaatttagacccaa 24611911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 26674401 - 26674439
Alignment:
Q  112 cttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  26674401 cttttccttctatcataattgaataagtgatttcacata 26674439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 6881986 - 6882023
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  6881986 ttttccttctatcctaattaaataagtgatttcacata 6882023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 7083907 - 7083870
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  7083907 ttttccttctatcataattgaataagtgatttcacata 7083870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 7861296 - 7861259
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  7861296 ttttccttctatcctaattaaataagtgatttcacata 7861259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 24100169 - 24100206
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  24100169 ttttccttctatcgtaattgaataagtgatttcacata 24100206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 24568804 - 24568767
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  24568804 ttttccttctatcctaattgaataagtgattttacata 24568767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 24611886 - 24611853
Alignment:
Q  117 ccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||| |||||||||||||    
T  24611886 ccttctatcctaattgaataagtgatttcacata 24611853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 26742646 - 26742575
Alignment:
Q  3 aaaccctagttgtcgcccctttcttctt---cttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||  ||| |||||||||||||   |||||| | ||| |||||||||||| |||||||||||||||    
T  26742646 aaaccctagcagtcacccctttcttctttttcttctttttagatgggtgatttaggatcaattttgacccaa 26742575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 28837034 - 28837083
Alignment:
Q  19 ccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    ||||||||||||||| |||| |||| ||| ||||||| ||||||||||||    
T  28837034 ccctttcttcttctttttgtgagagaggtaatttaggatcaattttgacc 28837083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 29268868 - 29268831
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  29268868 ttttccttttatcctaattgaataagtgatttcacata 29268831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 29922867 - 29922904
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  29922867 ttttctttctatcctaattgaataagtgatttcacata 29922904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 43493378 - 43493341
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  43493378 ttttccttctatcttaattgaataagtgatttcacata 43493341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 50801247 - 50801284
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  50801247 ttttccttttatcctaattgaataagtgatttcacata 50801284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 51152155 - 51152192
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  51152155 ttttccttctatcctaatttaataagtgatttcacata 51152192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 394365 - 394329
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacat 149  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  394365 ttttccttctatcctaattcaataagtgatttcacat 394329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 145
Target Start/End: Complemental strand, 22049496 - 22049464
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttc 145  Q
    |||||||||||||||||||||||| ||||||||    
T  22049496 ttttccttctatcctaattgaataagtgatttc 22049464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 39523439 - 39523475
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacat 149  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  39523439 ttttccttttatcctaattgaataagtgatttcacat 39523475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 42197514 - 42197558
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    |||||||| ||||| ||| |||||||||||||||| |||||||||    
T  42197514 ttcttcttattcttttcataggggtgatttagggttaattttgac 42197558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 8e-23; HSPs: 32)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29097728 - 29097798
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||| |||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  29097728 tcaaaccctagtcgtcgaccctttcttcttcttcttgtcctaggggtgatttagggtcaattttgacccaa 29097798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 17096421 - 17096350
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataat 75  Q
    |||||||||||||||| ||| ||||||||||||   |||||||||||||||||||||||||||||||||||||||    
T  17096421 tcaaaccctagttgtcacccatttcttcttctt---gtcagaggggtgatttagggtcaattttgacccaataat 17096350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 17699492 - 17699562
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||| ||| ||| ||||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  17699492 tcaaaccctagtcgtcacccttttcttcttcttcttttcagatgagtgatttagggtcaattttgacccaa 17699562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 17331289 - 17331337
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17331289 ttcttcttcttgttgtcagaggggtgatttagggtcaattttgacccaa 17331337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 28040588 - 28040638
Alignment:
Q  21 ctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  28040588 ctttcttcttcttcttttcagaggggtgatttacggtcaattttgacccaa 28040638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 39531583 - 39531495
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    |||||||||||  ||| ||||||| |||||| |||| ||||| |||||||||| |||||||||||||||||    ||||| ||||||||||||    
T  39531583 tcaaaccctagccgtcacccctttattcttcatcttctcagatgggtgatttaaggtcaattttgacccaa----aatcatccctccgagttg 39531495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 981187 - 981133
Alignment:
Q  21 ctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataat 75  Q
    |||||||||||||||| | ||| |||||||||||| |||||||||||||||||||    
T  981187 ctttcttcttcttctttttagaagggtgatttaggatcaattttgacccaataat 981133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 7771983 - 7771918
Alignment:
Q  3 aaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||| |||| ||| |||||||||||| ||   ||||||||||||||||||||||||||||||||    
T  7771983 aaaccctagctgtcacccttttcttcttcttttt---agaggggtgatttagggtcaattttgacccaa 7771918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 6281005 - 6281053
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| | |||||||||||||| |||||||||||||||||    
T  6281005 ttcttcttcttctttttagaggggtgatttatggtcaattttgacccaa 6281053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 6635210 - 6635258
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||| ||||||||||||||| |||||||||| ||||||||||||||    
T  6635210 ttcttctccttcttgtcagagggatgatttagggccaattttgacccaa 6635258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 43493811 - 43493881
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||  ||| ||| ||||| |||| |||||||| | ||||||||||||||||||||||||||| ||||    
T  43493811 tcaaacctcagtcgtcacccctctctttttcttctttttagaggggtgatttagggtcaattttgatccaa 43493881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 3740387 - 3740424
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  3740387 ttttccttctatcctaattgaataagtgatttcacata 3740424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 17096330 - 17096293
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  17096330 ttttccttctatcctaattgaataagtgatttcacata 17096293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 32347805 - 32347768
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  32347805 ttttccttctatcctaattgaataagtgatttcacata 32347768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 3740319 - 3740363
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    |||||||||||||| ||||||| |||||||||||| |||||||||    
T  3740319 ttcttcttcttcttttcagaggtgtgatttagggttaattttgac 3740363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 17699583 - 17699619
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacat 149  Q
    |||||||||||||||||||||||| ||||||||||||    
T  17699583 ttttccttctatcctaattgaataagtgatttcacat 17699619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 20483147 - 20483195
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| |  ||||||||||||||| |||||||||||||||    
T  20483147 ttcttcttcttctttttggaggggtgatttaggatcaattttgacccaa 20483195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 32347874 - 32347827
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||| ||||| ||||||||||||||||||||||| ||||||||||    
T  32347874 ttcttctt-ttcttttcagaggggtgatttagggtcaactttgacccaa 32347827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 33164628 - 33164584
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    |||||||| || ||||||||||||||||||| |||||||||||||    
T  33164628 ttcttcttgttgttgtcagaggggtgatttatggtcaattttgac 33164584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 23882267 - 23882233
Alignment:
Q  32 ttcttgtcagaggggtgatttagggtcaattttga 66  Q
    ||||| |||||||||||||||||||||||||||||    
T  23882267 ttcttttcagaggggtgatttagggtcaattttga 23882233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 6635280 - 6635317
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  6635280 ttttccttctatcataattgaataagtgatttcacata 6635317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 12891706 - 12891743
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  12891706 ttttccttttatcctaattgaataagtgatttcacata 12891743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 17331358 - 17331395
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  17331358 ttttccttctatcttaattgaataagtgatttcacata 17331395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 17687177 - 17687210
Alignment:
Q  26 ttcttcttcttgtcagaggggtgatttagggtca 59  Q
    ||||||||||||| ||||||||||||||||||||    
T  17687177 ttcttcttcttgttagaggggtgatttagggtca 17687210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 27241094 - 27241131
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  27241094 ttttccttttatcctaattgaataagtgatttcacata 27241131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 28040659 - 28040696
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  28040659 ttttccttatatcctaattgaataagtgatttcacata 28040696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 39179919 - 39179882
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  39179919 ttttccttctattctaattgaataagtgatttcacata 39179882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 39531494 - 39531457
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  39531494 ttttccttctatcgtaattgaataagtgatttcacata 39531457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 42609174 - 42609211
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  42609174 tttttcttctatcctaattgaataagtgatttcacata 42609211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 43493902 - 43493939
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  43493902 ttttccttctattctaattgaataagtgatttcacata 43493939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 178196 - 178160
Alignment:
Q  114 tttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  178196 tttccttatatcctaattgaataagtgatttcacata 178160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 26295218 - 26295170
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||| | | |||| |||||||||||||||||||||| ||||    
T  26295218 ttcttcttcttcattttagagaggtgatttagggtcaattttgatccaa 26295170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 2842 - 2928
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    |||||||||||| ||| |||||||||   ||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  2842 tcaaaccctagtcgtcacccctttct---tcttcttgttagaggggtgatttagggtcaattttgaccc---aataatcacccctccgagttg 2928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 2932 - 2969
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  2932 ttttccttctatcctaattgaataagtgatttcacata 2969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 6098 - 6165
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||    
T  6098 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgaccc---aaaaatcacccctccgagttg 6165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0312; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 6167 - 6204
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  6167 ttttccttctatcctaattgaataagtgatttcacata 6204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 47)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 13879174 - 13879107
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||||    
T  13879174 ttcttcttcttcttgtcagagggatgatttagggtcaattttgacccaa---taatcacccctccgagttg 13879107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 14019299 - 14019232
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||   |||||||||||||||||||    
T  14019299 ttcttcttcttcttgtcagagggatgatttagggtcaattttgacccaa---taatcacccctccgagttg 14019232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 12704626 - 12704696
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||| ||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  12704626 tcaaaccctagtcgtcacccttttcttcttcttctttttagaggggtgatttagggtcaattttgacccaa 12704696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 7073109 - 7073060
Alignment:
Q  22 tttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7073109 tttcttcttcttcttttcagaggggtgatttagggtcaattttgacccaa 7073060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 11938019 - 11937971
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11938019 ttcttcttcttcttttcagaggggtgatttagggtcaattttgacccaa 11937971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 12891249 - 12891201
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12891249 ttcttcttcttcttttcagaggggtgatttagggtcaattttgacccaa 12891201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 27095666 - 27095733
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||   ||| ||||||||||||||||||    
T  27095666 ttcttcgtcttcttgtcagatgggtgatttagggtcaattttgacc---taaaaatcacccctccgagttg 27095733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 32015181 - 32015248
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||   || ||||||||||||||||||    
T  32015181 ttcttcttctttttgttagaggggtgatttagggtcaattttgaccc---aaaaatcacccctccgagttg 32015248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 38535465 - 38535417
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38535465 ttcttcttcttcttttcagaggggtgatttagggtcaattttgacccaa 38535417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 43474292 - 43474240
Alignment:
Q  19 ccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  43474292 ccctttcttcttcttctttttagaggggtgatttagggtcaattttgacccaa 43474240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 9978851 - 9978781
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||| |||| ||| |||||||||| ||||||||  ||||||||||||||| |||||||||||||||||    
T  9978851 tcaaaccttagtcgtcacccctttctttttcttctttccagaggggtgatttaaggtcaattttgacccaa 9978781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 44942244 - 44942313
Alignment:
Q  21 ctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||||   || ||||||||||||||||||    
T  44942244 ctttcttcttcttcttttcagatgggtgatttatggtcaattttgaccc---aaaaatcacccctccgagttg 44942313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 5754248 - 5754297
Alignment:
Q  22 tttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  5754248 tttcttcttcttctttttagaggggtgatttagggtcaattttgacccaa 5754297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 22597072 - 22597144
Alignment:
Q  1 tcaaaccctagttgtcgcccctt--tcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||| ||| ||| ||  ||||||| |||||||||||||||||||||| |||||||||||||||||    
T  22597072 tcaaaccctagtcgtcaccctttcttcttctttttcttgtcagaggggtgatttaaggtcaattttgacccaa 22597144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 33012038 - 33012086
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  33012038 ttcttcttcttcttttcagacgggtgatttagggtcaattttgacccaa 33012086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 4604472 - 4604419
Alignment:
Q  18 cccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||||| || ||||| |||||||||| |||||||||||||||||    
T  4604472 cccctttcttcttctttttatcagaagggtgatttaaggtcaattttgacccaa 4604419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 25067816 - 25067861
Alignment:
Q  26 ttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||    
T  25067816 ttcttcttcttgttagagaggtgatttagggtcaattttgacccaa 25067861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 9690133 - 9690085
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||||    
T  9690133 ttcttcttcttcttttcagaggggtgatttaaggtcaaatttgacccaa 9690085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 15919835 - 15919902
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    ||||||| |||||| | ||||||||||||||| ||||||||||||||   || ||||||||||||||||||    
T  15919835 ttcttctccttcttattagaggggtgatttagagtcaattttgaccc---aaaaatcacccctccgagttg 15919902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 28262052 - 28262005
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  28262052 ttcttcttcttctt-tcagatgggtgatttagggtcaattttgacccaa 28262005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 41797585 - 41797643
Alignment:
Q  32 ttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    |||||||||||||||||||||||||| ||||||||||   ||| ||||||||||| ||||||    
T  41797585 ttcttgtcagaggggtgatttagggttaattttgacc---taaaaatcacccctcagagttg 41797643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 20561286 - 20561244
Alignment:
Q  29 ttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||  ||||||||||||||||||||||||||||||||||    
T  20561286 ttcttctgttcagaggggtgatttagggtcaattttgacccaa 20561244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31908998 - 31908928
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||| ||| |||| ||||||| ||||||||||| | |||||| |||||||| ||||||||||| ||||    
T  31908998 tcaaaccttagctgtcacccctttattcttcttctttttagagggatgatttagagtcaattttgatccaa 31908928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 17268215 - 17268178
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  17268215 ttttccttctatcctaattgaataagtgatttcacata 17268178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 27095735 - 27095772
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  27095735 ttttccttctatcctaattgaataagtgatttcacata 27095772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 4732102 - 4732138
Alignment:
Q  114 tttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4732102 tttccttctatcctaattgaataagtgatttcacata 4732138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 17268272 - 17268236
Alignment:
Q  35 ttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||||||||||| |||||||||||||||||    
T  17268272 ttgtcagaggggtgatttatggtcaattttgacccaa 17268236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 13879095 - 13879060
Alignment:
Q  115 ttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||| |||||||||||||    
T  13879095 ttccttctatcctaattgaataagtgatttcacata 13879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 150
Target Start/End: Complemental strand, 14019220 - 14019185
Alignment:
Q  115 ttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||| |||||||||||||    
T  14019220 ttccttctatcctaattgaataagtgatttcacata 14019185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 36867970 - 36868013
Alignment:
Q  24 tcttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    |||||||||||||   ||||||||||||||||||||||||||||    
T  36867970 tcttcttcttctttctagaggggtgatttagggtcaattttgac 36868013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 148
Target Start/End: Complemental strand, 43474219 - 43474184
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcaca 148  Q
    |||||||||||||||||||||||| |||||||||||    
T  43474219 ttttccttctatcctaattgaataagtgatttcaca 43474184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 4426749 - 4426712
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  4426749 ttttccttctatcctaattgaataaatgatttcacata 4426712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 4604398 - 4604361
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  4604398 ttttccttctattctaattgaataagtgatttcacata 4604361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 9690064 - 9690027
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  9690064 ttttccttctatcctaattgaataagtgatctcacata 9690027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 12704717 - 12704754
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  12704717 ttttccttatatcctaattgaataagtgatttcacata 12704754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 13740751 - 13740718
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttca 146  Q
    |||||||||||||||||||||||| |||||||||    
T  13740751 ttttccttctatcctaattgaataagtgatttca 13740718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 15919904 - 15919941
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  15919904 ttttccttctatcctaattgaataaatgatttcacata 15919941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 22597165 - 22597202
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  22597165 ttttccttctatcctaattaaataagtgatttcacata 22597202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 33012107 - 33012144
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  33012107 ttttccttctattctaattgaataagtgatttcacata 33012144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 34416852 - 34416815
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  34416852 ttttccttatatcctaattgaataagtgatttcacata 34416815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 34963225 - 34963180
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    |||||| |||| ||||||||||||| |||| |||||||||||||||    
T  34963225 ttcttcctcttgttgtcagaggggtaattttgggtcaattttgacc 34963180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 35333535 - 35333572
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  35333535 ttttcctgctatcctaattgaataagtgatttcacata 35333572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 38535396 - 38535359
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  38535396 ttttccttctatcataattgaataagtgatttcacata 38535359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 44942315 - 44942352
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  44942315 tttttcttctatcctaattgaataagtgatttcacata 44942352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 34470912 - 34470990
Alignment:
Q  9 tagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccga 89  Q
    |||| ||| ||| |||||| |||||||| | ||||||| | |||||||||||||||||||||| ||| | |||||||||||    
T  34470912 tagtcgtcacccttttctttttcttctttttagagggggg-tttagggtcaattttgacccaaaaatca-cacccctccga 34470990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 34963157 - 34963121
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacat 149  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  34963157 ttttccttctaccctaattgaataagtgatttcacat 34963121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 38384590 - 38384554
Alignment:
Q  35 ttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  38384590 ttgttagaggggtgattttgggtcaattttgacccaa 38384554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 424451 - 424384
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||    
T  424451 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgaccc---aaaaatcacccctccgagttg 424384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 45193786 - 45193733
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataata 76  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  45193786 ttcttcttcttcttgtcagaggggcgatttagggtcaattttaacccaataata 45193733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 27534660 - 27534708
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27534660 ttcttcttcttcttgtcagagggatgatttagggtcaattttgacccaa 27534708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 33487190 - 33487142
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  33487190 ttcttcttcttcttttcagaggggtgatttagggtcaattttgacccaa 33487142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Original strand, 12871585 - 12871649
Alignment:
Q  26 ttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    |||| |||| ||||||||||||||||||||||||||||||||||   || ||||||||||||||||||    
T  12871585 ttctccttcgtgtcagaggggtgatttagggtcaattttgaccc---aaaaatcacccctccgagttg 12871649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 45750439 - 45750496
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatca 80  Q
    |||||||||||||| |||||||||||||||| ||||||||||||||||| ||| ||||    
T  45750439 ttcttcttcttcttttcagaggggtgatttaaggtcaattttgacccaaaaatcatca 45750496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 28678290 - 28678242
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||    
T  28678290 ttcttcttcttctttttagaggggtgatttagggtcaattttgacccaa 28678242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 42490854 - 42490917
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccga 89  Q
    ||||||||||||||||||||| |||||||||||||||| |||||||   ||| ||||||||||||||    
T  42490854 ttcttcttcttcttgtcagagaggtgatttagggtcaagtttgacc---taaaaatcacccctccga 42490917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 71
Target Start/End: Complemental strand, 33939180 - 33939114
Alignment:
Q  5 accctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||| ||||| ||||||| || | |||||| | ||||||||||||||||||||||||||||||||    
T  33939180 accctaattgtcaccccttttttttccttctttttagaggggtgatttagggtcaattttgacccaa 33939114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 7995721 - 7995672
Alignment:
Q  23 ttcttcttcttcttgt-cagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||    
T  7995721 ttcttcttcttctttttcagaggggtgatttagggtcaattttgacccaa 7995672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 17347560 - 17347605
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    |||||||||||||||||||| || ||||||||||||||||||||||    
T  17347560 ttcttcttcttcttgtcagatggatgatttagggtcaattttgacc 17347605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 32784072 - 32784117
Alignment:
Q  26 ttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||    
T  32784072 ttcttcttcttttcaaaggggtgatttagggtcaattttgacccaa 32784117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 18343575 - 18343623
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||| || ||||||||||||||||||||| |||||||||||||||    
T  18343575 ttcttcttgttgttgtcagaggggtgatttaggatcaattttgacccaa 18343623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 3232749 - 3232792
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttga 66  Q
    |||||||||||||| ||||| |||||||||||||||||||||||    
T  3232749 ttcttcttcttcttttcagatgggtgatttagggtcaattttga 3232792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 14265251 - 14265309
Alignment:
Q  29 ttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgag 90  Q
    |||||||||||||| ||||||||||||||||||||||||   | || |||||||||||||||    
T  14265251 ttcttcttgtcagatgggtgatttagggtcaattttgac---aaaaaaatcacccctccgag 14265309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29205221 - 29205294
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttc---ttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||  ||||||| |||||||   |||||||| | ||| ||||||||||||||||||||||||||||    
T  29205221 tcaaaccctagccgtcgcccttttcttcgtcttcttctttttagacgggtgatttagggtcaattttgacccaa 29205294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 424382 - 424345
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  424382 ttttccttctatcctaattgaataagtgatttcacata 424345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 5832204 - 5832245
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaatttt 64  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  5832204 ttcttcttctttttgtaagaggggtgatttagggtcaatttt 5832245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 7995651 - 7995614
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  7995651 ttttccttctatcctaattgaataagtgatttcacata 7995614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 20411533 - 20411582
Alignment:
Q  22 tttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||||||| | ||| |||||||||| |||||||||||||||||    
T  20411533 tttcttcttcttctttttagatgggtgatttatggtcaattttgacccaa 20411582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 29726732 - 29726692
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaatttt 64  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  29726732 ttcttcttcttcttgtcagaggggtgattta-ggtcaatttt 29726692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 33487121 - 33487088
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttca 146  Q
    ||||||||||||||||||||||||||||||||||    
T  33487121 ttttccttctatcctaattgaatatgtgatttca 33487088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 37822436 - 37822399
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  37822436 ttttccttctatcctaattgaataagtgatttcacata 37822399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 45193717 - 45193680
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  45193717 ttttccttctatcctaattgaataagtgatttcacata 45193680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 47551106 - 47551151
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    ||||||||||| |||||||||||||||||||| | |||||||||||    
T  47551106 ttcttcttctttttgtcagaggggtgatttagagccaattttgacc 47551151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 42276321 - 42276380
Alignment:
Q  26 ttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccga 89  Q
    ||||||||||| |||||||||||||||||||| | ||||||| |||    ||||||||||||||    
T  42276321 ttcttcttcttttcagaggggtgatttagggttatttttgacacaa----aatcacccctccga 42276380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 3232818 - 3232855
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  3232818 ttttccttctatcctaattgaataaatgatttcacata 3232855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 14265314 - 14265351
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  14265314 ttttccttctatcctaattaaataagtgatttcacata 14265351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 15791645 - 15791604
Alignment:
Q  26 ttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    |||||||||||||| ||||| ||||||||| |||||||||||    
T  15791645 ttcttcttcttgtcggagggctgatttaggatcaattttgac 15791604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 32784138 - 32784175
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  32784138 ttttccttctatccttattgaataagtgatttcacata 32784175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 44517177 - 44517214
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  44517177 ttttccttctatcctaattcaataagtgatttcacata 44517214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 4882519 - 4882471
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| ||||| ||| ||||||| |||||||| |||||||    
T  4882519 ttcttcttcttcttttcagatgggcgatttagagtcaatttcgacccaa 4882471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 13488695 - 13488648
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||| || ||||||||||| |||||||||||| ||||||||||||    
T  13488695 ttcttcttgttgttgtcagaggg-tgatttagggtcgattttgacccaa 13488648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 53)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 15674807 - 15674740
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    |||||||||||| ||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  15674807 tcaaaccctagtcgtcacccttttcttcttcttcttttcagaggggtgatttagggtcaattttgacc 15674740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 24988514 - 24988448
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    ||||||||||||||||||    
T  24988514 ttcttcttcttcttgtcagaggggtgattcagggtcaattttgacccaa----aatcacccctccgagttg 24988448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17473905 - 17473838
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    |||||||||||||||| ||| ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  17473905 tcaaaccctagttgtcacccttttcttcttattcttttcagtggggtgatttagggtcaattttgacc 17473838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 17579309 - 17579376
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    |||||||||||||||| ||| ||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  17579309 tcaaaccctagttgtcacccttttcttcttattcttttcagtggggtgatttagggtcaattttgacc 17579376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 3266343 - 3266410
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||   |||||||||||    
T  3266343 ttcttcttcttcttgtcagaggggtgatttatggtcaattttgatccaataatcatc---cctccgagttg 3266410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 28665069 - 28665005
Alignment:
Q  26 ttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    ||||||||||||||||| ||||||||||||||||||||||||||  ||| ||||||||||||||||||    
T  28665069 ttcttcttcttgtcagatgggtgatttagggtcaattttgaccc--taa-aatcacccctccgagttg 28665005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 41287918 - 41287970
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataat 75  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  41287918 ttcttcttcttcttcttagaggggtgatttagggtcaattttgacccaataat 41287970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 46026189 - 46026141
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46026189 ttcttcttcttcttttcagaggggtgatttagggtcaattttgacccaa 46026141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 45457741 - 45457672
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttctt---cttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    |||||||||||||||| |||||||||||||   |||||| | ||||||||||||||||||||||||||||    
T  45457741 tcaaaccctagttgtcacccctttcttctttttcttctttttagaggggtgatttagggtcaattttgac 45457672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 22747668 - 22747619
Alignment:
Q  22 tttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  22747668 tttcttattcttcttgtcaaaggggtgatttagggtcaattttgacccaa 22747619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 48304556 - 48304507
Alignment:
Q  22 tttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  48304556 tttctttttcttcttttcagaggggtgatttagggtcaattttgacccaa 48304507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17509388 - 17509318
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgt---cagaggggtgatttagggtcaattttgacc 68  Q
    |||||||||||||||| ||| ||||||||||||||| |   ||||||| ||||||||||||||||||||||    
T  17509388 tcaaaccctagttgtcacccttttcttcttcttcttcttttcagagggatgatttagggtcaattttgacc 17509318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 17543826 - 17543896
Alignment:
Q  1 tcaaaccctagttgtcgcccctttct---tcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    |||||||||||||||| ||| |||||   |||||||||| |||||||| ||||||||||||||||||||||    
T  17543826 tcaaaccctagttgtcacccttttcttcttcttcttcttttcagagggatgatttagggtcaattttgacc 17543896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 27535395 - 27535458
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaatttt 64  Q
    |||||||||||| ||| ||| |||||||||||| ||  ||||||||||||||||||||||||||    
T  27535395 tcaaaccctagtcgtcacccttttcttcttcttttttacagaggggtgatttagggtcaatttt 27535458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 5684306 - 5684370
Alignment:
Q  3 aaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    ||||||||||||||  || ||||||||| ||||| | | ||||||||||||||||||||||||||    
T  5684306 aaaccctagttgtcatccttttcttcttattctttttaaaggggtgatttagggtcaattttgac 5684370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 5709356 - 5709420
Alignment:
Q  3 aaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    ||||||||||||||  || ||||||||| ||||| | | ||||||||||||||||||||||||||    
T  5709356 aaaccctagttgtcatccttttcttcttattctttttaaaggggtgatttagggtcaattttgac 5709420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 6667356 - 6667404
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| | ||||| ||||||||||||||||||||||||||    
T  6667356 ttcttcttcttctttttagaggagtgatttagggtcaattttgacccaa 6667404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 11832979 - 11833027
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||||    
T  11832979 ttcttcttcttcttttcagagggatgatttatggtcaattttgacccaa 11833027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 42644637 - 42644681
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    |||||||||||||| |||||||||||||||||| |||||||||||    
T  42644637 ttcttcttcttcttttcagaggggtgatttaggatcaattttgac 42644681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 45482031 - 45482071
Alignment:
Q  29 ttcttcttgtcagaggggtgatttagggtcaattttgaccc 69  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  45482031 ttcttcttgtcagaggagtgatttagggtcaattttgaccc 45482071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 36579472 - 36579426
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgaccc 69  Q
    |||||||||||||| | |||||| |||||||||||||||||||||||    
T  36579472 ttcttcttcttcttttaagagggatgatttagggtcaattttgaccc 36579426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 29 - 71
Target Start/End: Original strand, 40761556 - 40761598
Alignment:
Q  29 ttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  40761556 ttcttcttttcagagggatgatttagggtcaattttgacccaa 40761598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 21603492 - 21603529
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  21603492 ttttccttctatcctaattgaataagtgatttcacata 21603529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 28665003 - 28664966
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  28665003 ttttccttctatcctaattgaataagtgatttcacata 28664966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 32740783 - 32740820
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  32740783 ttttccttctatcctaattgaataagtgatttcacata 32740820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 41287988 - 41288025
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  41287988 ttttccttctatcctaattgaataggtgatttcacata 41288025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 42644706 - 42644743
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  42644706 ttttccttctatcctaattgaataagtgatttcacata 42644743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 1281322 - 1281252
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttctt---cttgtcagaggggtgatttagggtcaattttgacc 68  Q
    |||||||||||||||| ||| |||||||| |||   ||| ||||| ||||||||||||||| |||||||||    
T  1281322 tcaaaccctagttgtcacccttttcttctacttattcttttcagatgggtgatttagggtccattttgacc 1281252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 150
Target Start/End: Original strand, 3266420 - 3266455
Alignment:
Q  115 ttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||| |||||||||||||    
T  3266420 ttccttctatcctaattgaataagtgatttcacata 3266455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 9785254 - 9785326
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttct---tcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||  ||| || |||||||||   ||||||| ||| ||||||||||||||||||||||||||||||    
T  9785254 tcaaaccctagccgtcacctctttcttctgtttcttcttttca-aggggtgatttagggtcaattttgacccaa 9785326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 21990631 - 21990666
Alignment:
Q  32 ttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    ||||| ||||||||||||||||||||||||||||||    
T  21990631 ttcttttcagaggggtgatttagggtcaattttgac 21990666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 4621528 - 4621482
Alignment:
Q  22 tttcttcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    ||||||||||||||||||| || ||| |||||| |||||||||||||    
T  4621528 tttcttcttcttcttgtcaaagaggttatttagagtcaattttgacc 4621482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 5684395 - 5684432
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  5684395 ttttcattctatcctaattgaataagtgatttcacata 5684432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 5709445 - 5709482
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  5709445 ttttcattctatcctaattgaataagtgatttcacata 5709482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 9785347 - 9785384
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  9785347 ttttccttctatcttaattgaataagtgatttcacata 9785384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 10094428 - 10094461
Alignment:
Q  18 cccctttcttcttcttcttgtcagaggggtgatt 51  Q
    ||||||||||||||||||| ||||||||||||||    
T  10094428 cccctttcttcttcttcttttcagaggggtgatt 10094461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 10094471 - 10094508
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  10094471 ttttccttttatcctaattgaataagtgatttcacata 10094508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 11833049 - 11833086
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  11833049 ttttccttctttcctaattgaataagtgatttcacata 11833086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 15674703 - 15674666
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  15674703 ttttcctcctatcctaattgaataagtgatttcacata 15674666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 17473814 - 17473777
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  17473814 ttttccttttatcctaattgaataagtgatttcacata 17473777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 17509295 - 17509258
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  17509295 ttttccttttatcctaattgaataagtgatttcacata 17509258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 17543919 - 17543956
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  17543919 ttttccttttatcctaattgaataagtgatttcacata 17543956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 17579400 - 17579437
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  17579400 ttttccttttatcctaattgaataagtgatttcacata 17579437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 21603424 - 21603469
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    |||||||||||  | | |||||||||||||||||||||||||||||    
T  21603424 ttcttcttctttgttttagaggggtgatttagggtcaattttgacc 21603469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 21990692 - 21990729
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  21990692 ttttcctgctatcctaattgaataagtgatttcacata 21990729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 22747599 - 22747562
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  22747599 ttttccttctatcctaattgaataagtgatttgacata 22747562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 32740714 - 32740758
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    |||||||||||||| |||||||| |||||||| |||||||||||||    
T  32740714 ttcttcttcttcttttcagaggg-tgatttagagtcaattttgacc 32740758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 39533066 - 39533029
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  39533066 ttttccttctatcttaattgaataagtgatttcacata 39533029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 45457647 - 45457610
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  45457647 ttttccttctatcttaattgaataagtgatttcacata 45457610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 45482094 - 45482131
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  45482094 ttttccttctatcctaattaaataagtgatttcacata 45482131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 10574342 - 10574386
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    ||||| |||||||| | ||| ||||||||||||||||||||||||    
T  10574342 ttctttttcttctttttagatgggtgatttagggtcaattttgac 10574386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #52
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 39533134 - 39533087
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||| |||||||| | |||||| |||||||||||||||||||||||||    
T  39533134 ttctttttcttctttttagaggg-tgatttagggtcaattttgacccaa 39533087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #53
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 42603929 - 42603885
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    |||||||||||||| | |||| ||||||||| |||||||||||||    
T  42603929 ttcttcttcttctttttagagcggtgatttatggtcaattttgac 42603885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 3e-19; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 10147907 - 10147974
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataataatcacccctccgagttg 93  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  10147907 ttcttcttcttcatgttagaggggtgatttagggtcaattttgaccc---aataatcacccctccgagttg 10147974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 24791358 - 24791288
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||| |||||||||| ||| ||||||||||||||| | |||||||||||||| |||||||||||||||||    
T  24791358 tcaaatcctagttgtcacccttttcttcttcttctttttagaggggtgatttatggtcaattttgacccaa 24791288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 7583932 - 7583884
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7583932 ttcttcttcttcttgtcagaggggtgatttaggatcaattttgacccaa 7583884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 24699791 - 24699839
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24699791 ttcttcttcttcttgtcagaagggtgatttagggtcaattttgacccaa 24699839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 2025382 - 2025332
Alignment:
Q  18 cccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  2025382 cccctttcttcttcttcttgttagaggggtgatttatggtcaattttgacc 2025332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 11161843 - 11161891
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||    
T  11161843 ttcttcttcttcttgttagaggggtaatttagggtcaattttgacccaa 11161891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 1810405 - 1810339
Alignment:
Q  2 caaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||| ||| ||| |||||||||||| ||   ||||||||||||||||||||||||||||||||    
T  1810405 caaaccctagtcgtcacccttttcttcttcttttt---agaggggtgatttagggtcaattttgacccaa 1810339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 30027082 - 30027040
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttg 65  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  30027082 ttcttcttcttcttgtcagaggggtgatttagggtcatttttg 30027040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 37612617 - 37612662
Alignment:
Q  26 ttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||    
T  37612617 ttcttcttctttttagaggggtgatttagggtcaattttgacccaa 37612662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 14600866 - 14600818
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||| ||||||| |||| |||||||||||||||||||||||||||    
T  14600866 ttcttctttttcttgttagagaggtgatttagggtcaattttgacccaa 14600818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 31407916 - 31407868
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||||    
T  31407916 ttcttcttcttatttttagaggggtgatttagggtcaattttgacccaa 31407868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 39067857 - 39067809
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| | |||||||||||||| |||||||||||||||||    
T  39067857 ttcttcttcttcttttaagaggggtgatttaaggtcaattttgacccaa 39067809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 41361693 - 41361741
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||||||  |||||||||||| |||||||||||||||||    
T  41361693 ttcttcttcttcttgtcgaaggggtgatttatggtcaattttgacccaa 41361741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 30027039 - 30027000
Alignment:
Q  32 ttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  30027039 ttcttgtcagaggggtgatttagggtcatttttgacccaa 30027000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 31308103 - 31308146
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttga 66  Q
    |||||||||||||||| |||||||||||||| ||||||||||||    
T  31308103 ttcttcttcttcttgttagaggggtgatttaaggtcaattttga 31308146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 9501620 - 9501657
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  9501620 ttttccttctatcctaattgaataagtgatttcacata 9501657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 31308178 - 31308215
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  31308178 ttttccttctatcctaattgaataagtgatttcacata 31308215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 31202419 - 31202467
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||| | ||| |||||||||| |||||||||||||||||    
T  31202419 ttcttcttcttctttttagatgggtgatttaaggtcaattttgacccaa 31202467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 9501528 - 9501598
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||  |||  || ||||||||||||||| | | || |||||||||||||||||||||| ||||    
T  9501528 tcaaaccctagccgtcatccttttcttcttcttctttttaaagtggtgatttagggtcaattttgatccaa 9501598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 2234569 - 2234532
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  2234569 ttttccttctatcctagttgaataagtgatttcacata 2234532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 10147977 - 10148014
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  10147977 tttttcttctatcctaattgaataagtgatttcacata 10148014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 10338921 - 10338884
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  10338921 ttttccttttatcctaattgaataagtgatttcacata 10338884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 12329656 - 12329693
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  12329656 ttttccttttatcctaattgaataagtgatttcacata 12329693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 23971193 - 23971156
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  23971193 ttttccttctattctaattgaataagtgatttcacata 23971156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 37128585 - 37128548
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  37128585 ttttccttctatcctagttgaataagtgatttcacata 37128548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 37612683 - 37612720
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  37612683 ttttccttctatcctagttgaataagtgatttcacata 37612720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 39067788 - 39067751
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||||||||| |||| |||||||||||||    
T  39067788 ttttccttctatcctaatttaataagtgatttcacata 39067751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 15590261 - 15590191
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||| ||  ||  ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15590261 tcaaaccctagtcgttaccattttcttcttcttcttttcagaggggtgatttagggtcaattttgacccaa 15590191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 6420018 - 6419970
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6420018 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgatccaa 6419970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 12481530 - 12481482
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12481530 ttcttcttcttcttgtcagaggggtgatttaggatcaattttgacccaa 12481482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 23654211 - 23654259
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23654211 ttcttcttcttcttgtcagagaggtgatttagggtcaattttgacccaa 23654259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 4084956 - 4085024
Alignment:
Q  1 tcaaaccctagttgtcgccc-ctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    |||||||||||||||| ||| ||||||| ||||| || | |||||||||||||||||||||||||||||    
T  4084956 tcaaaccctagttgtcacccactttctttttctttttctgagaggggtgatttagggtcaattttgacc 4085024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 8693842 - 8693772
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||| ||||  ||| ||| ||||||||||||||| | |||||||||||||| |||||||||||||||||    
T  8693842 tcaaactctagccgtcacccttttcttcttcttctttttagaggggtgatttaaggtcaattttgacccaa 8693772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 4922042 - 4921989
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaataata 76  Q
    ||||||||||||| || | |||||||||||||||||||||||||||||| ||||    
T  4922042 ttcttcttcttctcgttaaaggggtgatttagggtcaattttgacccaaaaata 4921989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 21507965 - 21507920
Alignment:
Q  26 ttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||    
T  21507965 ttcttcttctttttagaggggtgatttagggtcaattttgacccaa 21507920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 29927539 - 29927491
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||||||||||| | |||||||| |||||||||||||||||    
T  29927539 ttcttcttcttcttgtcagatgagtgatttatggtcaattttgacccaa 29927491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 6419949 - 6419912
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  6419949 ttttccttctatcctaattgaataagtgatttcacata 6419912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 2304970 - 2304922
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||| ||||||| |||||||||||||||| || ||||||||||||    
T  2304970 ttcttctttttcttgttagaggggtgatttaggatcgattttgacccaa 2304922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 35220063 - 35220019
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    |||||||||||||| |  |||||||||||||||||||||||||||    
T  35220063 ttcttcttcttcttcttggaggggtgatttagggtcaattttgac 35220019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 6296413 - 6296367
Alignment:
Q  22 tttcttcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    ||||||||||||||| | ||||||||||||||| || ||||||||||    
T  6296413 tttcttcttcttctttttagaggggtgatttagagttaattttgacc 6296367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 6303223 - 6303177
Alignment:
Q  22 tttcttcttcttcttgtcagaggggtgatttagggtcaattttgacc 68  Q
    ||||||||||||||| | ||||||||||||||| || ||||||||||    
T  6303223 tttcttcttcttctttttagaggggtgatttagagttaattttgacc 6303177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 4921972 - 4921935
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  4921972 ttttccttctatcttaattgaataagtgatttcacata 4921935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 14783262 - 14783225
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  14783262 ttttccttctatcctagttgaataagtgatttcacata 14783225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 15590170 - 15590133
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  15590170 tttttcttctatcctaattgaataagtgatttcacata 15590133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 21507899 - 21507862
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||| ||||||| |||||||||||||    
T  21507899 ttttccttctatcctagttgaataagtgatttcacata 21507862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 31937510 - 31937473
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  31937510 tttttcttctatcctaattgaataagtgatttcacata 31937473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: scaffold1379
Description:

Target: scaffold1379; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 1271 - 1198
Alignment:
Q  1 tcaaaccctagttgtcgcccctttcttcttcttctt---gtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||||  ||||||||||||||||| |||||   ||||||||||||||||| |||||||||||||||||    
T  1271 tcaaaccctagccgtcgcccctttcttctttttctttttgtcagaggggtgatttaaggtcaattttgacccaa 1198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 5 - 42
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  5 ttttccttctatcttaattgaataagtgatttcacata 42  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1379; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 1177 - 1140
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  1177 ttttccttctaccctaattgaataagtgatttcacata 1140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 4226 - 4182
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgac 67  Q
    |||||||||||||||||||| || |||||||||||||||||||||    
T  4226 ttcttcttcttcttgtcagaaggctgatttagggtcaattttgac 4182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 35043 - 35091
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||||| |||||| || |||||||||||||||||||||||||||    
T  35043 ttcttcttctttttgtcaaagaggtgatttagggtcaattttgacccaa 35091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 35112 - 35149
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  35112 ttttccttctatcctaattgaataagtgatttcacata 35149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 74194 - 74231
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||||||||||||||||||| |||||||||||||    
T  74194 ttttccttctatcctaattgaataagtgatttcacata 74231  T

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Target: scaffold1350 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 1534 - 1584
Alignment:
Q  21 ctttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    ||||||||| ||| ||||||||||||| ||||||| || ||||||||||||    
T  1534 ctttcttctacttgttgtcagaggggtaatttaggttccattttgacccaa 1584  T

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Target: scaffold0321 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 113 - 150
Target Start/End: Complemental strand, 7215 - 7178
Alignment:
Q  113 ttttccttctatcctaattgaatatgtgatttcacata 150  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  7215 ttttccttttatcctaattgaataagtgatttcacata 7178  T

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Target: scaffold0121 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 13408 - 13361
Alignment:
Q  23 ttcttcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||| ||||| |||||| |||||||||||||||||||||| ||||    
T  13408 ttcttctt-ttcttttcagagaggtgatttagggtcaattttgatccaa 13361  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 404414 - 404370
Alignment:
Q  27 tcttcttcttgtcagaggggtgatttagggtcaattttgacccaa 71  Q
    |||||||||| ||||||||| |||||| |||||||||||| ||||    
T  404414 tcttcttcttttcagaggggcgatttaaggtcaattttgatccaa 404370  T

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