View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9379_low_9 (Length: 487)

Name: NF9379_low_9
Description: NF9379
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9379_low_9
NF9379_low_9
[»] chr6 (13 HSPs)
chr6 (19-483)||(2865957-2866421)
chr6 (19-483)||(2860578-2861042)
chr6 (19-483)||(2885147-2885608)
chr6 (25-258)||(2909999-2910232)
chr6 (19-258)||(2842112-2842351)
chr6 (19-258)||(2833269-2833508)
chr6 (19-236)||(14577872-14578089)
chr6 (25-197)||(2828815-2828987)
chr6 (322-411)||(2841947-2842036)
chr6 (328-438)||(2910316-2910426)
chr6 (289-411)||(2833551-2833673)
chr6 (321-405)||(14577694-14577778)
chr6 (283-405)||(2828590-2828712)
[»] chr7 (1 HSPs)
chr7 (19-146)||(1800792-1800919)
[»] chr4 (1 HSPs)
chr4 (49-126)||(53395497-53395574)
[»] chr5 (1 HSPs)
chr5 (74-137)||(8052204-8052267)


Alignment Details
Target: chr6 (Bit Score: 429; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 2865957 - 2866421
Alignment:
19 aattctagatcatatacatcgtagttcatgaaatttgcaatagcagatatcatggtagattttccagttcctggtggaccatagagtagataaccgcgtt 118  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
2865957 aattcaagatcatatacatcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccgcgtt 2866056  T
119 tccaagcctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2866057 tccaagcctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgt 2866156  T
219 ttcaaaccttgcagggtgtgcaaaatttgtgtgactccaccccgacatccaccaacaaccgctattgttggtgtaaagctttagtcgcttattcttaaat 318  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
2866157 ttcaaaccttgcagggtgcgcaaaatttgtgtgactccaccccgacatccaccaacaaccgctattgttggtgtaaagctttagtcgcctattcttaaat 2866256  T
319 ataatagcctttccttggtccaacacatgttgtatgtaagaggaagtaatgagatcgcgatgccttttgtggaaagttagggttaagtatcttaccacat 418  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2866257 ataacagcctttccttggtccaacacatgttgtatgtaagaggaagtaatgagatcgcgatgccttttgtggaaagttagggttaagtatcttaccacat 2866356  T
419 caaaattaggtcttcctgaagatgcttttcttgttggaccattgctatttgaagaccaccaaact 483  Q
    | |||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||    
2866357 cgaaattaggtcttcctgaagatgcttttcttgttggagctttgctgtttgaagaccaccaaact 2866421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 2860578 - 2861042
Alignment:
19 aattctagatcatatacatcgtagttcatgaaatttgcaatagcagatatcatggtagattttccagttcctggtggaccatagagtagataaccgcgtt 118  Q
    ||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
2860578 aattcaagatcatacacgtcgtagttcatgaaatttgcaatagcagatatcatggtagatttcccagttcctggtggaccatagagtagataaccccgtt 2860677  T
119 tccaagcctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2860678 tccaagcctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgt 2860777  T
219 ttcaaaccttgcagggtgtgcaaaatttgtgtgactccaccccgacatccaccaacaaccgctattgttggtgtaaagctttagtcgcttattcttaaat 318  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
2860778 ttcaaaccttgcagggtgtgcaaaatttgtgtgactccaccctgacatccaccaacaaccgctattgttggtgtaaagctttagtcgcctattcttaaat 2860877  T
319 ataatagcctttccttggtccaacacatgttgtatgtaagaggaagtaatgagatcgcgatgccttttgtggaaagttagggttaagtatcttaccacat 418  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2860878 ataatagcctttccttgttccaacacatgttgtatgtaagaggaagtaatgagatcgcgatgccttttgtggaaagttagggttaagtatcttaccacat 2860977  T
419 caaaattaggtcttcctgaagatgcttttcttgttggaccattgctatttgaagaccaccaaact 483  Q
    | |||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||    
2860978 cgaaattaggtcttcctgaagatgcttttcttgttggagctttgctgtttgaagaccaccaaact 2861042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 19 - 483
Target Start/End: Original strand, 2885147 - 2885608
Alignment:
19 aattctagatcatatacatcgtagttcatgaaatttgcaatagcagatatcatggtagattttccagttcctggtggaccatagagtagataaccgcgtt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||    
2885147 aattctagatcatatacatcgtagttcatgaaatttgcaatagccgatatcatggtagatttcccagttcctggtggaccataaagtagataaccccgtt 2885246  T
119 tccaagcctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
2885247 tccaagcctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgt 2885346  T
219 ttcaaaccttgcagggtgtgcaaaatttgtgtgactccaccccgacatccaccaacaaccgctattgttggtgtaaagctttagtcgcttattcttaaat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||    
2885347 ttcaaaccttgcagggtgtgcaaaatttgtgtgactccaccccgacatccaccaacaaccaccattgttggtgtaaagctttagtcgcctattcttaaat 2885446  T
319 ataatagcctttccttggtccaacacatgttgtatgtaagaggaagtaatgagatcgcgatgccttttgtggaaagttagggttaagtatcttaccacat 418  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
2885447 ataatagcctttccttgttccaacacatgttgtatgtaagaggaagtaatgagatcgcgatgccttttgtggaaagttagggtgaagcatcttaccacat 2885546  T
419 caaaattaggtcttcctgaagatgcttttcttgttggaccattgctatttgaagaccaccaaact 483  Q
    | ||   || |||||||||||||||||||||| ||||| | |||||||||| |||||||||||||    
2885547 cgaa---agatcttcctgaagatgcttttcttcttggagctttgctatttgcagaccaccaaact 2885608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 25 - 258
Target Start/End: Original strand, 2909999 - 2910232
Alignment:
25 agatcatatacatcgtagttcatgaaatttgcaatagcagatatcatggtagattttccagttcctggtggaccatagagtagataaccgcgtttccaag 124  Q
    |||||||| || || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||| |    
2909999 agatcataaacgtcatagttcatgaaattcgcaatagcagatatcatggtagattttccggttcctggtggaccataaactagataaccacgtttccacg 2910098  T
125 cctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgtttcaaa 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
2910099 cctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttccttcttctccggttccatagcaagtgtttcaaa 2910198  T
225 ccttgcagggtgtgcaaaatttgtgtgactccac 258  Q
    ||||||||||||  ||||| ||||||||||||||    
2910199 ccttgcagggtgctcaaaagttgtgtgactccac 2910232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 2842351 - 2842112
Alignment:
19 aattctagatcatatacatcgtagttcatgaaatttgcaatagcagatatcatggtagattttccagttcctggtggaccatagagtagataaccgcgtt 118  Q
    ||||| |||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||| || |||||||| |||||| | ||||||||||| ||||    
2842351 aattcaagatcatacacatcatagttcatgaaattagcaatagccgatatcatggtagatttaccggttcctggaggaccaaaaagtagataaccacgtt 2842252  T
119 tccaagcctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgt 218  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||| |  ||||||| |||||||||    
2842251 tccaagcttttccaactttagcataatactctttccctttcttgaatttaacaagatcatttagaatctcttctttcttttttggttccaaagcaagtgt 2842152  T
219 ttcaaaccttgcagggtgtgcaaaatttgtgtgactccac 258  Q
    |||||| ||||| |||||  ||||| ||||||||||||||    
2842151 ttcaaaacttgccgggtgctcaaaagttgtgtgactccac 2842112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 2833269 - 2833508
Alignment:
19 aattctagatcatatacatcgtagttcatgaaatttgcaatagcagatatcatggtagattttccagttcctggtggaccatagagtagataaccgcgtt 118  Q
    ||||| |||||||| ||||| ||||||||| ||||||| ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||| ||||    
2833269 aattcaagatcatacacatcatagttcatgtaatttgctatagctgatatcatagtagattttccagttcctggaggaccataaagtagataaccacgtt 2833368  T
119 tccaagcctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgt 218  Q
    |||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| ||||  ||||||| |||||| || ||||||||||| || ||    
2833369 tccaagcctttccaactttagcataatactctttacctttcttgaacttaagaagatcatttaaaatctcttgtttcttttctggttccatagctagggt 2833468  T
219 ttcaaaccttgcagggtgtgcaaaatttgtgtgactccac 258  Q
    | |||| |||||||| ||  ||||| |||||||| |||||    
2833469 tccaaatcttgcaggatgctcaaaagttgtgtgattccac 2833508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 14578089 - 14577872
Alignment:
19 aattctagatcatatacatcgtagttcatgaaatttgcaatagcagatatcatggtagattttccagttcctggtggaccatagagtagataaccgcgtt 118  Q
    ||||| |||||||| || ||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||  | |||| |||||||||||    
14578089 aattcaagatcataaacgtcgtagttcataaaatttgcaatagccgatatcatggtagattttccggttcctggaggaccgaaaagtaaataaccgcgtt 14577990  T
119 tccaagcctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttcttctccggttccatagcaagtgt 218  Q
    ||||||||||||||||||||||||| |||||||| |||  |||||| ||||||||||||| ||| ||||||||||||||||  |  ||||||||||||||    
14577989 tccaagcctttccaactttagcatagtactctttacctgccttgaacttaacaagatcgtctattatctcttctttcttctttgcatccatagcaagtgt 14577890  T
219 ttcaaaccttgcagggtg 236  Q
    ||| ||||||||||||||    
14577889 ttcgaaccttgcagggtg 14577872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 2828987 - 2828815
Alignment:
25 agatcatatacatcgtagttcatgaaatttgcaatagcagatatcatggtagattttccagttcctggtggaccatagagtagataaccgcgtttccaag 124  Q
    |||||||| ||||| || ||||||||||| |||||||| |||||||| ||||||||||||||||| || |||||| | ||||||||||| ||||||||||    
2828987 agatcatacacatcataattcatgaaattagcaatagctgatatcatcgtagattttccagttccaggaggaccaaaaagtagataaccacgtttccaag 2828888  T
125 cctttccaactttagcataatactctttccctttcttgaatttaacaagatcgtttatgatctcttctttctt 197  Q
    |||| || ||||||| ||| |||||||| ||| | ||||| ||||||||||| ||||| || |||||||||||    
2828887 ccttcccgactttagtatagtactctttacctgttttgaacttaacaagatcatttataatttcttctttctt 2828815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 322 - 411
Target Start/End: Complemental strand, 2842036 - 2841947
Alignment:
322 atagcctttccttggtccaacacatgttgtatgtaagaggaagtaatgagatcgcgatgccttttgtggaaagttagggttaagtatctt 411  Q
    |||||||||||||| ||||| ||||||||||||||||||| ||| ||||| || ||||||||||| |||||||||||||||||| |||||    
2842036 atagcctttccttgttccaaaacatgttgtatgtaagaggtagtgatgagttcacgatgccttttatggaaagttagggttaagaatctt 2841947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 328 - 438
Target Start/End: Original strand, 2910316 - 2910426
Alignment:
328 tttccttggtccaacacatgttgtatgtaagaggaagtaatgagatcgcgatgccttttgtggaaagttagggttaagtatcttaccacatcaaaattag 427  Q
    |||||||| || ||||||||||| ||||| |||| ||| |||||||| | ||||||||||| ||| |||||||||| |||||||| ||||||  ||||||    
2910316 tttccttgttctaacacatgttggatgtacgaggtagtgatgagatcaccatgccttttgtcgaaggttagggttaggtatcttatcacatccgaattag 2910415  T
428 gtcttcctgaa 438  Q
    |||||||||||    
2910416 gtcttcctgaa 2910426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 411
Target Start/End: Original strand, 2833551 - 2833673
Alignment:
289 gtgtaaagctttagtcgcttattcttaaatataatagcctttccttggtccaacacatgttgtatgtaagaggaagtaatgagatcgcgatgccttttgt 388  Q
    ||||||||||||||| || |||||||    |||||||  |||||||  |||||||||||||| |||||||||| ||| ||||  || |||||| |||| |    
2833551 gtgtaaagctttagttgcctattcttgctcataatagattttccttcatccaacacatgttgaatgtaagaggtagtgatgacttcacgatgctttttat 2833650  T
389 ggaaagttagggttaagtatctt 411  Q
    |||| |||||||||||| |||||    
2833651 ggaaggttagggttaagaatctt 2833673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 405
Target Start/End: Complemental strand, 14577778 - 14577694
Alignment:
321 aatagcctttccttggtccaacacatgttgtatgtaagaggaagtaatgagatcgcgatgccttttgtggaaagttagggttaag 405  Q
    |||||| |||||||  |||||||||| |||||||||||||| ||| |||||| | || | |||||||||||| ||||| ||||||    
14577778 aatagcttttccttcatccaacacatattgtatgtaagaggtagtgatgagaccacggtaccttttgtggaaggttagtgttaag 14577694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 405
Target Start/End: Complemental strand, 2828712 - 2828590
Alignment:
283 ttgttggtgtaaagctttagtcgcttattcttaaatataatagcctttccttggtccaacacatgttgtatgtaagaggaagtaatgagatcgcgatgcc 382  Q
    |||||||| |||||||| ||   | ||||||| ||| |||||||||||||||| || ||||||||||| || |||||   |||||| || || ||||       
2828712 ttgttggtataaagcttaagcttcctattcttcaatgtaatagcctttccttgttctaacacatgttggatataagacctagtaataagctcacgatatt 2828613  T
383 ttttgtggaaagttagggttaag 405  Q
    |||||||||| ||||||||||||    
2828612 ttttgtggaaggttagggttaag 2828590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 1800919 - 1800792
Alignment:
19 aattctagatcatatacatcgtagttcatgaaatttgcaatagcagatatcatggtagattttccagttcctggtggaccatagagtagataaccgcgtt 118  Q
    ||||| |||||||| ||||| |||||||||||||| || ||||| | |||||| |||||||| || |||||||| |||||||| |||| |||||||||||    
1800919 aattcaagatcataaacatcatagttcatgaaattcgccatagcggctatcatagtagatttacctgttcctggaggaccataaagtaaataaccgcgtt 1800820  T
119 tccaagcctttccaactttagcataata 146  Q
    |||||||||| || | ||| ||||||||    
1800819 tccaagccttaccgatttttgcataata 1800792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 53395574 - 53395497
Alignment:
49 aaatttgcaatagcagatatcatggtagattttccagttcctggtggaccatagagtagataaccgcgtttccaagcc 126  Q
    ||||| || |||||||  |||||| ||||||||||||||||||| |||||||| || |||||||| | ||||||||||    
53395574 aaattagccatagcagcaatcatgctagattttccagttcctggaggaccataaagaagataacctcttttccaagcc 53395497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 137
Target Start/End: Complemental strand, 8052267 - 8052204
Alignment:
74 tagattttccagttcctggtggaccatagagtagataaccgcgtttccaagcctttccaacttt 137  Q
    |||||||||| ||||||||||||||||| | ||  ||||| |||||||||| ||| ||||||||    
8052267 tagattttcctgttcctggtggaccatacaataagtaaccacgtttccaaggcttaccaacttt 8052204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University