View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9380_low_11 (Length: 222)

Name: NF9380_low_11
Description: NF9380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9380_low_11
NF9380_low_11
[»] chr8 (2 HSPs)
chr8 (15-205)||(21239239-21239427)
chr8 (137-201)||(30911384-30911448)
[»] chr2 (4 HSPs)
chr2 (150-199)||(8024799-8024848)
chr2 (137-198)||(8192481-8192542)
chr2 (129-198)||(32526215-32526284)
chr2 (137-205)||(4618808-4618876)
[»] chr5 (2 HSPs)
chr5 (137-185)||(21042668-21042716)
chr5 (144-198)||(36895438-36895492)
[»] chr6 (2 HSPs)
chr6 (144-198)||(3907554-3907608)
chr6 (150-198)||(17149586-17149634)
[»] chr4 (3 HSPs)
chr4 (89-119)||(48992474-48992504)
chr4 (145-198)||(7093390-7093443)
chr4 (159-199)||(19220561-19220601)
[»] chr3 (2 HSPs)
chr3 (137-199)||(50582998-50583060)
chr3 (137-198)||(4252526-4252587)
[»] chr7 (1 HSPs)
chr7 (143-187)||(37056230-37056274)


Alignment Details
Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 21239239 - 21239427
Alignment:
Q  15 tctatttaacaaatataatatatataacaactatannnnnnnaaggaatatacatagcaactattatatcactataaactatgcaaaagaaattaatatg 114  Q
    ||||||||||||| ||||||||||||||||||||        ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21239239 tctatttaacaaacataatatatataacaactat--ttttttaagaaatatacatagcaactattatatcactataaactatgcaaaagaaattaatatg 21239336  T
Q  115 tgatgtaaactacacatttagagttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgattttccctg 205  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21239337 tgatgtaaactacacatttagagttggcttagtggttggcttgcgatcttggagtgtgttcctttcaaggtttcaagtttgattttccctg 21239427  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 30911448 - 30911384
Alignment:
Q  137 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgattttc 201  Q
    |||||| || |||||| |||| ||||||||||| || |||| ||||||||||| ||| |||||||    
T  30911448 gttggcctaatgattgatttgagatcttggagtttgctcctctcaaggtttcatgtttgattttc 30911384  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 8024848 - 8024799
Alignment:
Q  150 ttggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgattt 199  Q
    |||||||||||| |||||||||||| || |||||||||||||||||||||    
T  8024848 ttggtttgcgatgttggagtgtgtttctctcaaggtttcaagttcgattt 8024799  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 8192542 - 8192481
Alignment:
Q  137 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 198  Q
    |||||| ||||| |||| ||| |||||||||||||| |||| ||||||| ||| ||||||||    
T  8192542 gttggcctagtggttggcttgggatcttggagtgtgctcctctcaaggtctcaggttcgatt 8192481  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 198
Target Start/End: Complemental strand, 32526284 - 32526215
Alignment:
Q  129 catttagagttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 198  Q
    ||||| |||||||||||||| ||| |||| ||||||| ||| || |||| ||||||| ||| ||||||||    
T  32526284 catttggagttggcttagtggttgatttgggatcttgaagtttgctcctctcaaggtctcaggttcgatt 32526215  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 4618876 - 4618808
Alignment:
Q  137 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgattttccctg 205  Q
    |||||| ||||| |||| |||  |||||||||| || |||| ||||||||||| ||||||||| |||||    
T  4618876 gttggcctagtggttggcttggaatcttggagtatgctcctctcaaggtttcaggttcgatttcccctg 4618808  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 21042716 - 21042668
Alignment:
Q  137 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggt 185  Q
    ||||| ||||||||||||||| ||||||||||| || ||||||||||||    
T  21042716 gttggtttagtgattggtttgggatcttggagtttgctcctttcaaggt 21042668  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 36895438 - 36895492
Alignment:
Q  144 tagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 198  Q
    |||||||| | ||| |||||||||||||| |||| ||||||||||| ||||||||    
T  36895438 tagtgattagcttgggatcttggagtgtgctcctctcaaggtttcatgttcgatt 36895492  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 3907554 - 3907608
Alignment:
Q  144 tagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 198  Q
    ||||| |||||||| |||||||| ||||| |||| ||||| ||||||||||||||    
T  3907554 tagtggttggtttgggatcttggggtgtgctcctctcaagatttcaagttcgatt 3907608  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 17149634 - 17149586
Alignment:
Q  150 ttggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 198  Q
    |||||||| |||||||||||||| |||| ||||||| ||| ||||||||    
T  17149634 ttggtttgggatcttggagtgtgctcctctcaaggtctcaggttcgatt 17149586  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 119
Target Start/End: Complemental strand, 48992504 - 48992474
Alignment:
Q  89 taaactatgcaaaagaaattaatatgtgatg 119  Q
    |||||||||||||||||||||||||||||||    
T  48992504 taaactatgcaaaagaaattaatatgtgatg 48992474  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 7093390 - 7093443
Alignment:
Q  145 agtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 198  Q
    |||| |||| ||| |||||||||||||| |||||||||||||| | ||||||||    
T  7093390 agtggttggcttgggatcttggagtgtgctcctttcaaggttttaggttcgatt 7093443  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 19220561 - 19220601
Alignment:
Q  159 gatcttggagtgtgttcctttcaaggtttcaagttcgattt 199  Q
    |||||||||||||| |||| ||||||||||| |||||||||    
T  19220561 gatcttggagtgtgctcctctcaaggtttcaggttcgattt 19220601  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 50582998 - 50583060
Alignment:
Q  137 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgattt 199  Q
    |||||| ||||| |||||||| ||||||||||| || |||| | ||||||||| |||||||||    
T  50582998 gttggcctagtggttggtttgggatcttggagtttgctcctcttaaggtttcaggttcgattt 50583060  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 4252587 - 4252526
Alignment:
Q  137 gttggcttagtgattggtttgcgatcttggagtgtgttcctttcaaggtttcaagttcgatt 198  Q
    |||||| ||||| |||| ||| |||||||||||||| |||| ||||||| ||||||| ||||    
T  4252587 gttggcctagtggttggcttgagatcttggagtgtgctcctctcaaggtctcaagtttgatt 4252526  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 37056230 - 37056274
Alignment:
Q  143 ttagtgattggtttgcgatcttggagtgtgttcctttcaaggttt 187  Q
    |||||| |||||||| |||||||||||||| |||| |||||||||    
T  37056230 ttagtggttggtttgtgatcttggagtgtgctcctctcaaggttt 37056274  T

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