View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9380_low_2 (Length: 570)

Name: NF9380_low_2
Description: NF9380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9380_low_2
NF9380_low_2
[»] chr4 (1 HSPs)
chr4 (25-318)||(1193790-1194083)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 25 - 318
Target Start/End: Complemental strand, 1194083 - 1193790
Alignment:
Q  25 aaaatatttacaaa-gtcatagtgcctttattgaaagagcaccaacaaaaacagaaaataaattaacaaggatgccaactatgtattttctaaatttttg 123  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1194083 aaaatatttacaaaagtcatattgcctttattgaaagagcaccaacaaaaacagaaaataaattaacaaggatgccaactatgtattttctgaatttttg 1193984  T
Q  124 g-ttatatatcgagaagtattaaattatttccattttgccatgaaaattttgcaaaattcatgcgcaattggacacatatccaacttgaaaaatataaaa 222  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||||||    
T  1193983 gtttatatatcgagaagtattaaattatttccattttgccatgaaaattttgc--aattcatgcgcaattggacacatatccaacatgaaaaatataaaa 1193886  T
Q  223 tttgagnnnnnnncctttcaaatttgtcagctaaccaccaataatcacaataaaccacaaaagaaacaggataatgcaagatttcttagattacta 318  Q
    ||||||       |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1193885 tttgagtttttttcctttcaaatttgtcagctaaccaccaataattacaataaaccacaaaagaaacaggataatgcaagatttcttagattacta 1193790  T

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