View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9380_low_5 (Length: 491)
Name: NF9380_low_5
Description: NF9380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9380_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 20 - 477
Target Start/End: Original strand, 33742740 - 33743197
Alignment:
| Q |
20 |
tttggcaaatgaactgaattcatattctgctcaaattaataatcatttttcatttatactagtttcaaatgggacaacattctttaataatcatttttgg |
119 |
Q |
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| T |
33742740 |
tttggcaaatgaactgaattcatattctgctcaaattaataatcatttttcatttatactagtttcaaatgggacaacattctttaataatcatttttgg |
33742839 |
T |
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| Q |
120 |
tttattattgtaggaaatgaagcagagacaagatcagatgtgagagacgagacgacgcaagagattgtttcgagtatcgctagaattatatctgaatgtt |
219 |
Q |
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| T |
33742840 |
tttattattgtaggaaatgaagcaaagacaagatcagatgtgagagacgagacgacgcaggagattgtttcgagtatcgctagaattatatctgaatgtt |
33742939 |
T |
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| Q |
220 |
ggatttcgaatgtagatagatacacctttttaaatatagctaagatgcatgtttggtgattgttttactttttgtggacatattttcttggtgtaaatta |
319 |
Q |
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| T |
33742940 |
ggatttcgaatgtagatagatacacctttttaaatatagctaagatgcatgtttggtgattgttttactttttgtggacatattttcttggtgtaaatta |
33743039 |
T |
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| Q |
320 |
ttagtcaaatgatcaccaatggaagttaaactcggtgaaatgtgttagactgatacaatgtgacaaactaaaatccaaattttgattgaaagatgtgtcc |
419 |
Q |
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| T |
33743040 |
ttagtcaaatgatcaccaatggaagttaaactcggtgaaatgtgttagactgttacaatgtgacaaactaaaatccgaattttgattgaaagatgtgtcc |
33743139 |
T |
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| Q |
420 |
ttcgcatagcaatctcatcaggcgcggtgtgccgcttcctgtcgatgggatgaggtgt |
477 |
Q |
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| T |
33743140 |
ttcgcataacaatctcatcaggcgcggtgtgccgcttcctgtcgatgggatggggtgt |
33743197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 33732919 - 33732994
Alignment:
| Q |
20 |
tttggcaaatgaactgaattcatattctgctcaaattaataatcatttttcatttatactagtttcaaatgggaca |
95 |
Q |
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|||||||||||||||||||| |||||| ||||||||||| ||||||||||| |||| |||||||||||| |||| |
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| T |
33732919 |
tttggcaaatgaactgaatttgaattctgatcaaattaatactcatttttcatctatattagtttcaaatgtgaca |
33732994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 33737621 - 33737684
Alignment:
| Q |
37 |
attcatattctgctcaaattaataatcatttttcatttatactagtttcaaatgggacaacatt |
100 |
Q |
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| T |
33737621 |
attcatattcaaatcaaattaatactcatttttcatttatatttgtttcaaatgggacagcatt |
33737684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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