View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9380_low_6 (Length: 410)
Name: NF9380_low_6
Description: NF9380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9380_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 184 - 394
Target Start/End: Original strand, 2633644 - 2633854
Alignment:
| Q |
184 |
tcaagttgaaattcgtaaacctatgatgtaaaatccatttttcatcacttttacctgccatcaagcattgattccaattttgaaagttctttgtattgag |
283 |
Q |
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| T |
2633644 |
tcaagttgaaattcgtaaacctttgatgcaaaatccatttctcatcacttttacctgccatcaagcattgattccaattttgaaagttctttgtattgag |
2633743 |
T |
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| Q |
284 |
aatggttccttcctacaagattagtcttccttttccatcttcatagtgttagccctttttcaacaattgaccaaggctaatgaagttactcttcattttt |
383 |
Q |
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| T |
2633744 |
aatggttccttcctacaagattagtcttccttttccatcttcatagtgttagccctttttcaacaattgaccaaggctaatgaagttactcttcattttt |
2633843 |
T |
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| Q |
384 |
gggatatacaa |
394 |
Q |
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||||||||||| |
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| T |
2633844 |
gggatatacaa |
2633854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 2633498 - 2633644
Alignment:
| Q |
14 |
agatgtcaaagataactttggttgatgttatgcatcaattttgttatatgattgttgtcaatgtagcactagatgttaggctcctataataataaagtgt |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2633498 |
agatgtcaaagataactttggttgatgttatgtatcaattttgttatatgattgttgtgaatgtagcactagatgttaggctcctataataataaagtgt |
2633597 |
T |
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| Q |
114 |
gccaatgttcgaaattcgaatcccaactaaaagaggtattggaattt |
160 |
Q |
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| T |
2633598 |
gccaatgttcgaaatttgaatcccaactaaaagaggtattggaattt |
2633644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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