View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9380_low_7 (Length: 338)

Name: NF9380_low_7
Description: NF9380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9380_low_7
NF9380_low_7
[»] chr2 (9 HSPs)
chr2 (1-337)||(33026384-33026720)
chr2 (1-336)||(33037881-33038222)
chr2 (1-336)||(33020043-33020375)
chr2 (4-105)||(33023912-33024013)
chr2 (274-325)||(36577366-36577417)
chr2 (274-336)||(7174362-7174424)
chr2 (274-336)||(7199967-7200029)
chr2 (272-310)||(34570484-34570522)
chr2 (284-336)||(34560906-34560958)
[»] scaffold1004 (1 HSPs)
scaffold1004 (1-319)||(1873-2188)
[»] scaffold0760 (1 HSPs)
scaffold0760 (1-319)||(4368-4683)
[»] chr6 (2 HSPs)
chr6 (1-327)||(24417484-24417804)
chr6 (277-325)||(370785-370833)
[»] scaffold0044 (2 HSPs)
scaffold0044 (234-336)||(89103-89205)
scaffold0044 (10-105)||(88876-88971)
[»] chr5 (7 HSPs)
chr5 (225-319)||(20292946-20293040)
chr5 (225-319)||(20301394-20301488)
chr5 (225-319)||(20305807-20305901)
chr5 (225-319)||(20310211-20310305)
chr5 (274-325)||(11081813-11081864)
chr5 (274-325)||(23766862-23766913)
chr5 (274-325)||(23816710-23816761)
[»] chr3 (48 HSPs)
chr3 (235-327)||(2456210-2456302)
chr3 (230-336)||(2476590-2476696)
chr3 (234-327)||(7430534-7430627)
chr3 (235-327)||(771497-771589)
chr3 (261-336)||(2631344-2631419)
chr3 (229-319)||(13498179-13498269)
chr3 (263-336)||(43991949-43992022)
chr3 (261-333)||(9608336-9608408)
chr3 (233-325)||(37753345-37753437)
chr3 (274-325)||(3754600-3754651)
chr3 (261-336)||(7324420-7324495)
chr3 (138-181)||(763705-763748)
chr3 (274-325)||(4142134-4142185)
chr3 (274-325)||(4157944-4157995)
chr3 (138-181)||(9585279-9585322)
chr3 (230-325)||(9594624-9594719)
chr3 (261-327)||(754607-754673)
chr3 (229-327)||(2644360-2644458)
chr3 (266-336)||(9561974-9562044)
chr3 (230-336)||(9565818-9565924)
chr3 (274-319)||(803224-803269)
chr3 (230-327)||(2659150-2659247)
chr3 (230-327)||(7334237-7334334)
chr3 (132-201)||(44001473-44001542)
chr3 (14-54)||(771770-771810)
chr3 (262-326)||(783798-783862)
chr3 (135-175)||(783949-783989)
chr3 (276-319)||(997578-997621)
chr3 (276-319)||(1013968-1014011)
chr3 (264-327)||(1437986-1438048)
chr3 (274-325)||(2678399-2678450)
chr3 (274-325)||(2696732-2696783)
chr3 (265-336)||(7942476-7942547)
chr3 (1-52)||(9608626-9608677)
chr3 (230-336)||(2492038-2492144)
chr3 (261-327)||(9587183-9587249)
chr3 (138-188)||(9587322-9587372)
chr3 (1-54)||(784070-784123)
chr3 (274-319)||(968671-968716)
chr3 (276-317)||(2459277-2459318)
chr3 (261-336)||(2635711-2635783)
chr3 (262-327)||(7427603-7427668)
chr3 (135-164)||(7430652-7430681)
chr3 (75-108)||(7443203-7443236)
chr3 (1-54)||(9587459-9587512)
chr3 (124-181)||(43991813-43991870)
chr3 (274-326)||(1891063-1891115)
chr3 (273-325)||(2442038-2442090)
[»] chr7 (4 HSPs)
chr7 (139-188)||(27755555-27755604)
chr7 (264-336)||(39298967-39299039)
chr7 (278-325)||(3927063-3927110)
chr7 (273-325)||(1078160-1078212)
[»] chr1 (4 HSPs)
chr1 (136-174)||(51854806-51854844)
chr1 (136-174)||(51858465-51858503)
chr1 (274-315)||(23896147-23896188)
chr1 (136-181)||(51829632-51829677)


Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 33026384 - 33026720
Alignment:
Q  1 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33026384 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttttgagtggcactgtta 33026483  T
Q  101 attggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattttgagaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33026484 attggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccagattttgagaa 33026583  T
Q  201 ggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatgga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33026584 ggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatgga 33026683  T
Q  301 aataaaaagtcttggactagattgtactgtgttcctc 337  Q
    ||||||||||||||||||||||||||| |||||||||    
T  33026684 aataaaaagtcttggactagattgtaccgtgttcctc 33026720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 33037881 - 33038222
Alignment:
Q  1 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgtta 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||  | | | ||||||||||||  ||||||||||||    
T  33037881 agtgttcatactttgggtacggatacttggagaaggataccagacttcccatattctggcccgttttgtgggtatggaatatttgtcggtggcactgtta 33037980  T
Q  101 attggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattttgagaa 200  Q
    ||||| ||||||| ||| | ||||||||||  || ||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||| |||||||    
T  33037981 attggttgtcgttagacgaagtgagttctttgtgcgtcattgtttctcttgatttggagaaggaatcgtatcaaacgctttcgctgcctgatattgagaa 33038080  T
Q  201 ggatcgtttgataa------gaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaa 294  Q
     |||| ||||| ||      |   |||| |||||||||||||||||||||||||||||| ||| | |||||||||||| ||||||||| |||||||| ||    
T  33038081 tgatcctttgacaaatttgggggatttgggggttttgagggattgcttgtgcatctttgcaagtagtgatatgttttttgatgtttggattatgaaggaa 33038180  T
Q  295 tatggaaataaaaagtcttggactagattgtactgtgttcct 336  Q
    |||||||| |||||||||||||||||||||||| ||||||||    
T  33038181 tatggaaacaaaaagtcttggactagattgtaccgtgttcct 33038222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 33020043 - 33020375
Alignment:
Q  1 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgtta 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |||||||| |  | | | ||||||||||||||||||||| ||||    
T  33020043 agtgttcatactttgggtacggatacttggagaaggataccagacttcccatgttttggcccgtgtcgtgggtatggaatatttgtgagtggcacagtta 33020142  T
Q  101 attggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattttgagaa 200  Q
    ||||| || | |||||  ||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||| ||| |||||| ||||| |||||    
T  33020143 attggttggcattcgaagatgtgagttctccgtgtgtcattgtttctcttgatttggagaaggagtcgtatcaaacgtttttgctgcctgatttcgagaa 33020242  T
Q  201 ggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatgga 300  Q
    ||||| ||||   | || |||| ||||||||||||||||||||||| |||||| ||  | ||||||||||||  |||| ||| |||||||| ||||||||    
T  33020243 ggatcctttg---acaaatttgggggttttgagggattgcttgtgcttctttgcaaatagtgatatgttttttaatgtgtggattatgaaggaatatgga 33020339  T
Q  301 aataaaaagtcttggactagattgtactgtgttcct 336  Q
    ||||||||||||||||||||||||||| ||||||||    
T  33020340 aataaaaagtcttggactagattgtaccgtgttcct 33020375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 33023912 - 33024013
Alignment:
Q  4 gttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgttaatt 103  Q
    ||||||||||||| |||  |||| ||| ||||||| ||| |||||||||||  |||| |||||  | | || ||||||||||||||| ||| ||||||||    
T  33023912 gttcatactttggatacgaatacatggtgaaggatgccaaacttcccatattttggctcgttttgtgggttgggaatatttgtgagtcgcaatgttaatt 33024011  T
Q  104 gg 105  Q
    ||    
T  33024012 gg 33024013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 36577366 - 36577417
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    ||||||||| |||||||| |||||||||||||| ||||||||| || |||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgt 36577417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 336
Target Start/End: Complemental strand, 7174424 - 7174362
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtactgtgttcct 336  Q
    ||||| ||| |||||||| ||||||||||| || | |||||||||||||||| | ||||||||    
T  7174424 gatgtctggcttatgaaggaatatggaaatcaagattcttggactagattgttccgtgttcct 7174362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 336
Target Start/End: Complemental strand, 7200029 - 7199967
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtactgtgttcct 336  Q
    |||||||||||||||||| | | ||||||| |||| |||||| ||||||||| | ||||||||    
T  7200029 gatgtttgggttatgaaggagtttggaaatgaaaattcttgggctagattgttccgtgttcct 7199967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 34570522 - 34570484
Alignment:
Q  272 tggatgtttgggttatgaagcaatatggaaataaaaagt 310  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  34570522 tggatgtttgggttatggaggaatatggaaataaaaagt 34570484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 34560958 - 34560906
Alignment:
Q  284 ttatgaagcaatatggaaataaaaagtcttggactagattgtactgtgttcct 336  Q
    |||||||  |||||||||||||||| |||||||||| ||||||  ||||||||    
T  34560958 ttatgaaagaatatggaaataaaaaatcttggactaaattgtatagtgttcct 34560906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1004 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 1873 - 2188
Alignment:
Q  1 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgtta 100  Q
    ||||||||||||||||||||  || |||||| || |||||  ||||||||||||| | | |||||   | | |  ||||||||||||| ||||| |||||    
T  1873 agtgttcatactttgggtacgtattcttggataaagatacatgacttcccatatactagtccgttatgtgggtcaggaatatttgtgaatggcaatgtta 1972  T
Q  101 attggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattttgagaa 200  Q
    ||||| || | || ||   ||||| |||||| ||||||||||||||||||||||||  ||| ||||  ||||||| ||||| ||  ||  || | ||||     
T  1973 attggttggcattagatggtgtgacttcttcgtgtgtcattgtttctcttgatttgacgaaagagtcatatcaaaagcttttgccacctaatatggagat 2072  T
Q  201 ggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatgga 300  Q
    ||||| || ||  |   ||||| ||||||| | |||||||||||||||||||| ||| |||||| |||||||| ||||||||| ||||||| ||||||||    
T  2073 ggatcattggacga---ctttgggggttttaaaggattgcttgtgcatctttgcaagtaatgatgtgtttttgaatgtttgggctatgaaggaatatgga 2169  T
Q  301 aataaaaagtcttggacta 319  Q
    |||  | ||||||||||||    
T  2170 aatgtagagtcttggacta 2188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 4368 - 4683
Alignment:
Q  1 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgtta 100  Q
    ||||||||||||||||||||  || |||||| || |||||  ||||||||||||| | | |||||   | | |  ||||||||||||| ||||| |||||    
T  4368 agtgttcatactttgggtacgtattcttggataaagatacatgacttcccatatactagtccgttatgtgggtcaggaatatttgtgaatggcaatgtta 4467  T
Q  101 attggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattttgagaa 200  Q
    ||||| || | || ||   ||||| |||||| ||||||||||||||||||||||||  ||| ||||  ||||||| ||||| ||  ||  || | ||||     
T  4468 attggttggcattagatggtgtgacttcttcgtgtgtcattgtttctcttgatttgacgaaagagtcatatcaaaagcttttgccacctaatatggagat 4567  T
Q  201 ggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatgga 300  Q
    ||||| || ||  |   ||||| ||||||| | |||||||||||||||||||| ||| |||||| |||||||| ||||||||| ||||||| ||||||||    
T  4568 ggatcattggacga---ctttgggggttttaaaggattgcttgtgcatctttgcaagtaatgatgtgtttttgaatgtttgggctatgaaggaatatgga 4664  T
Q  301 aataaaaagtcttggacta 319  Q
    |||  | ||||||||||||    
T  4665 aatgtagagtcttggacta 4683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 24417804 - 24417484
Alignment:
Q  1 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgtta 100  Q
    |||||||||||  ||||||||||| ||||||||| ||||| |||||||||||||  | ||| |||  |||| || ||||||||||||||||||||| |||    
T  24417804 agtgttcataccctgggtacagattcttggagaacgatacaagacttcccatattctcgccagttacatcggttgggaatatttgtgagtggcactatta 24417705  T
Q  101 attggatgtcgttcgacaatgtgagttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattttgagaa 200  Q
    ||||| ||  | | ||| |||   ||||||| | | |||||||||||||||||||||| || ||||  ||| ||  |||| |||||||  |||| ||| |    
T  24417704 attggttggtggtagacgatg---gttcttcgtttttcattgtttctcttgatttggaaaatgagtcatataaacggcttgcgctgcctaatttggagga 24417608  T
Q  201 ggatcgtttgataagaactttgtgggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatgga 300  Q
     ||| |||| | |||   |||| |||||||||||||||| ||||||||| ||  ||    |||  |||||||  |||||||| |||||||  ||||||||    
T  24417607 tgattgtttcacaag---tttgggggttttgagggattgtttgtgcatcattacaaccggtgacgtgtttttaaatgtttggattatgaaagaatatgga 24417511  T
Q  301 aataaaaagtcttggactagattgtac 327  Q
    |||||| | |||||||||| |||||||    
T  24417510 aataaagaatcttggactaaattgtac 24417484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 325
Target Start/End: Complemental strand, 370833 - 370785
Alignment:
Q  277 gtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    ||||||||||||||| | |||||||||||| | |||||||||| |||||    
T  370833 gtttgggttatgaagaattatggaaataaagattcttggactaaattgt 370785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 234 - 336
Target Start/End: Original strand, 89103 - 89205
Alignment:
Q  234 ggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtactgtgtt 333  Q
    |||||||||||||||||||  ||| | |||||| ||||| ||| |||||||||||||| |||||||||||||| |||||||||||| |||||||  ||||    
T  89103 ggattgcttgtgcatctttacaagtagtgatatattttttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgtt 89202  T
Q  334 cct 336  Q
    |||    
T  89203 cct 89205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 10 - 105
Target Start/End: Original strand, 88876 - 88971
Alignment:
Q  10 actttgggtacagatacttggagaaggataccagacttcccatataatggcccgtttgatcgatttggaatatttgtgagtggcactgttaattgg 105  Q
    ||||| ||||| |||  ||||||||| |||  ||||||||||||| |||| || ||  ||  ||  ||||||||||||||||||||||||||||||    
T  88876 actttaggtactgattattggagaagaataaaagacttcccatatgatggtcccttacatgaatcgggaatatttgtgagtggcactgttaattgg 88971  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 319
Target Start/End: Original strand, 20292946 - 20293040
Alignment:
Q  225 ggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggacta 319  Q
    |||||||||||||||||||||||||| |||||  | |||| ||  ||||||||||||| |||||||| ||||||||| |||| ||||||||||||    
T  20292946 ggttttgagggattgcttgtgcatctatgtaactagtgatctggatttggatgtttggattatgaaggaatatggaattaaagagtcttggacta 20293040  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 319
Target Start/End: Original strand, 20301394 - 20301488
Alignment:
Q  225 ggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggacta 319  Q
    |||||||||||||||||||||||||| |||||  | |||| ||  ||||||||||||| |||||||| |||||| || |||| ||||||||||||    
T  20301394 ggttttgagggattgcttgtgcatctatgtaactagtgatctggatttggatgtttggattatgaaggaatatgcaattaaagagtcttggacta 20301488  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 319
Target Start/End: Original strand, 20305807 - 20305901
Alignment:
Q  225 ggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggacta 319  Q
    |||||||||||||||||||||||||| |||||  | |||| ||  ||||||||| ||| |||||||| ||||||||| |||| ||||||||||||    
T  20305807 ggttttgagggattgcttgtgcatctatgtaactagtgatctggatttggatgtctggattatgaaggaatatggaattaaagagtcttggacta 20305901  T

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Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 319
Target Start/End: Original strand, 20310211 - 20310305
Alignment:
Q  225 ggttttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggacta 319  Q
    |||||||||||||||||||||||||| |||||  | |||| ||  ||||||||| ||| |||||||| ||||||||| |||| ||||||||||||    
T  20310211 ggttttgagggattgcttgtgcatctatgtaactagtgatctggatttggatgtctggattatgaaggaatatggaattaaagagtcttggacta 20310305  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 11081813 - 11081864
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    |||||||||||||||||| | |||||||||||| |||||||||||| |||||    
T  11081813 gatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattgt 11081864  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 23766913 - 23766862
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    ||||||||| |||||||  |||||||||||||| |||||||||||| |||||    
T  23766913 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgt 23766862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 23816761 - 23816710
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    ||||||||| |||||||  |||||||||||||| |||||||||||| |||||    
T  23816761 gatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgt 23816710  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 327
Target Start/End: Original strand, 2456210 - 2456302
Alignment:
Q  235 gattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtac 327  Q
    |||||||||||||| |||| ||    ||||||||||| ||||||||||||||||||| |||||||||||||| | |||||||||| |||||||    
T  2456210 gattgcttgtgcatttttgcaaattgtgatatgttttgggatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgtac 2456302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 230 - 336
Target Start/End: Original strand, 2476590 - 2476696
Alignment:
Q  230 tgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtactg 329  Q
    |||||||||||||||| |||| || |   | |||||||||| ||||||||||| ||||||| || |||||||||||| |||||||||||| |||||||      
T  2476590 tgagggattgcttgtgtatctctgcagctagtgatatgtttatggatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacac 2476689  T
Q  330 tgttcct 336  Q
    |||||||    
T  2476690 tgttcct 2476696  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 234 - 327
Target Start/End: Complemental strand, 7430627 - 7430534
Alignment:
Q  234 ggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtac 327  Q
    |||||||||||||||||||| |||   | ||  |||||||||||||||| |||||||| | ||||||||||||||||||| ||||| |||||||    
T  7430627 ggattgcttgtgcatctttgcaagttgtcatgggtttttggatgtttggattatgaagaagtatggaaataaaaagtcttagactaaattgtac 7430534  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 235 - 327
Target Start/End: Complemental strand, 771589 - 771497
Alignment:
Q  235 gattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtac 327  Q
    |||||||||||||| |||| ||    ||||||||||| ||||||||||||||||||| |||||||||||| | | |||||||||| |||||||    
T  771589 gattgcttgtgcatttttgcaaattgtgatatgttttgggatgtttgggttatgaaggaatatggaaatacagactcttggactaaattgtac 771497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 2631344 - 2631419
Alignment:
Q  261 tgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtactgtgttcct 336  Q
    ||||||||||||| |||||||| |||||||| ||||||||||| || |||||||||||| ||||| | ||||||||    
T  2631344 tgatatgtttttgaatgtttggattatgaaggaatatggaaatcaagagtcttggactaaattgtgcagtgttcct 2631419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 319
Target Start/End: Original strand, 13498179 - 13498269
Alignment:
Q  229 ttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggacta 319  Q
    |||| ||||||||||||||| |||  |   |||||||| ||| ||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  13498179 ttgaaggattgcttgtgcatattttcacataatgatatctttgtggatgtttggattatgaaggaatatggaaataaagagtcttggacta 13498269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 263 - 336
Target Start/End: Original strand, 43991949 - 43992022
Alignment:
Q  263 atatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtactgtgttcct 336  Q
    |||||||||||||||||||| |||||||| |||||||||||| | |||||||||| | ||||||  ||||||||    
T  43991949 atatgtttttggatgtttggattatgaaggaatatggaaatatagagtcttggaccaaattgtatagtgttcct 43992022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 9608408 - 9608336
Alignment:
Q  261 tgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtactgtgtt 333  Q
    |||||||||||| |||||||||||||||||| |||||||||||| | | |||||||||| ||| ||| |||||    
T  9608408 tgatatgttttttgatgtttgggttatgaaggaatatggaaatatagattcttggactaaattatacagtgtt 9608336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 233 - 325
Target Start/End: Complemental strand, 37753437 - 37753345
Alignment:
Q  233 gggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    |||||| | |||||||||||| ||| |||||  ||||| ||||||||||| ||||| || |||||||||| ||| |||||||||||| |||||    
T  37753437 gggattacctgtgcatctttgcaagtaatgaattgtttatggatgtttggattatggaggaatatggaaagaaagagtcttggactaaattgt 37753345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 274 - 325
Target Start/End: Original strand, 3754600 - 3754651
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    |||||||||||||||||| |||||||||||||| |||||||||||| |||||    
T  3754600 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattgt 3754651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 336
Target Start/End: Complemental strand, 7324495 - 7324420
Alignment:
Q  261 tgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtactgtgttcct 336  Q
    |||||||| ||||||||||||| |||||||| | || ||||||||| |||||||||||| ||||||  ||||||||    
T  7324495 tgatatgtctttggatgtttggattatgaaggactacggaaataaagagtcttggactaaattgtatagtgttcct 7324420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 763748 - 763705
Alignment:
Q  138 cattgtttctcttgatttggagaaggagttgtatcaaacgcttt 181  Q
    ||||||||||||||||||||||||||||| |||||||| |||||    
T  763748 cattgtttctcttgatttggagaaggagtcgtatcaaaagcttt 763705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 4142185 - 4142134
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    ||||||||| |||||||| |||||||||||||| |||||||||||| |||||    
T  4142185 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 4142134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 4157995 - 4157944
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    ||||||||| |||||||| |||||||||||||| |||||||||||| |||||    
T  4157995 gatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgt 4157944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 181
Target Start/End: Complemental strand, 9585322 - 9585279
Alignment:
Q  138 cattgtttctcttgatttggagaaggagttgtatcaaacgcttt 181  Q
    ||||||||||||||||||||||||||||| |||||||| |||||    
T  9585322 cattgtttctcttgatttggagaaggagtcgtatcaaaagcttt 9585279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 325
Target Start/End: Complemental strand, 9594719 - 9594624
Alignment:
Q  230 tgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    ||||||||||||||||  |||||| ||  | ||||||||||||| |||||||| |||||||  | || |||||| || |||||||||||| |||||    
T  9594719 tgagggattgcttgtgtgtctttgaaactagtgatatgtttttgaatgtttggattatgaataagtacggaaatgaagagtcttggactaaattgt 9594624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 754673 - 754607
Alignment:
Q  261 tgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtac 327  Q
    |||||||||| ||||||||||| |||||||| | |||||| || || |||||||||||| |||||||    
T  754673 tgatatgtttatggatgtttggattatgaaggagtatggagatcaagagtcttggactaaattgtac 754607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 327
Target Start/End: Complemental strand, 2644458 - 2644360
Alignment:
Q  229 ttgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtac 327  Q
    |||||||||||||||||  |||||| ||  | ||||   | ||||||||||||| |||||||| | ||||||||| || |||||||||||| |||||||    
T  2644458 ttgagggattgcttgtgtgtctttgcaactagtgatgaatatttggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtac 2644360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 336
Target Start/End: Complemental strand, 9562044 - 9561974
Alignment:
Q  266 tgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtactgtgttcct 336  Q
    ||||||||||||||||| |||||||  | ||||||||| || |||||||||||| ||| ||| ||||||||    
T  9562044 tgtttttggatgtttggattatgaatgagtatggaaatcaagagtcttggactaaattatacagtgttcct 9561974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 336
Target Start/End: Complemental strand, 9565924 - 9565818
Alignment:
Q  230 tgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtactg 329  Q
    |||||| |||||||||  |||||| ||| | |||||||| | ||||||||||| |||||||| | || ||| || || |||||||||||| |||||||      
T  9565924 tgaggggttgcttgtgtgtctttgcaagtagtgatatgtatatggatgtttggattatgaaggagtacggagatcaagagtcttggactaaattgtacat 9565825  T
Q  330 tgttcct 336  Q
    |||||||    
T  9565824 tgttcct 9565818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 319
Target Start/End: Complemental strand, 803269 - 803224
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttggacta 319  Q
    |||||||||||||||||  |||||||||||||| ||||||||||||    
T  803269 gatgtttgggttatgaaagaatatggaaataaagagtcttggacta 803224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 2659247 - 2659150
Alignment:
Q  230 tgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtac 327  Q
    ||||||||||||||||  |||||| ||| | ||||   | || |||||||||| |||||||| | ||||||||| || |||||||||||| |||||||    
T  2659247 tgagggattgcttgtgtgtctttgcaagtagtgatgaatattgggatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtac 2659150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 327
Target Start/End: Complemental strand, 7334334 - 7334237
Alignment:
Q  230 tgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtac 327  Q
    ||||||||||||||||  ||||||  || | |||||| | || |||||||||| | |||||| | || ||||||||| |||||||||||| |||||||    
T  7334334 tgagggattgcttgtgtgtctttgccagtagtgatatatattgggatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtac 7334237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 44001473 - 44001542
Alignment:
Q  132 ctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgccggattttgagaag 201  Q
    ||||| |||||||||||||||| | || |||||||  ||||||  |||||||||||| ||||||||||||    
T  44001473 ctgtgacattgtttctcttgatcttgaaaaggagtcatatcaacagctttcgctgcctgattttgagaag 44001542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 771810 - 771770
Alignment:
Q  14 tgggtacagatacttggagaaggataccagacttcccatat 54  Q
    ||||||||||| ||||||||||||||| |||||||||||||    
T  771810 tgggtacagattcttggagaaggatacaagacttcccatat 771770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 326
Target Start/End: Complemental strand, 783862 - 783798
Alignment:
Q  262 gatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgta 326  Q
    |||||| || ||||||||||| |||||||| |||||||||||| |||| | ||||||| ||||||    
T  783862 gatatgcttgtggatgtttggattatgaaggaatatggaaatacaaagccatggactaaattgta 783798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 783989 - 783949
Alignment:
Q  135 tgtcattgtttctcttgatttggagaaggagttgtatcaaa 175  Q
    ||||||||||||||||||||||||||| |||| ||||||||    
T  783989 tgtcattgtttctcttgatttggagaatgagtcgtatcaaa 783949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 319
Target Start/End: Original strand, 997578 - 997621
Alignment:
Q  276 tgtttgggttatgaagcaatatggaaataaaaagtcttggacta 319  Q
    ||||||||| |||||| |||||||||||||| ||||||||||||    
T  997578 tgtttgggtaatgaaggaatatggaaataaagagtcttggacta 997621  T

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Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 276 - 319
Target Start/End: Original strand, 1013968 - 1014011
Alignment:
Q  276 tgtttgggttatgaagcaatatggaaataaaaagtcttggacta 319  Q
    ||||||||| |||||| |||||||||||||| ||||||||||||    
T  1013968 tgtttgggtaatgaaggaatatggaaataaagagtcttggacta 1014011  T

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Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 264 - 327
Target Start/End: Original strand, 1437986 - 1438048
Alignment:
Q  264 tatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtac 327  Q
    ||||||| ||||||||||| |||||||| |||||||||||||| | ||||||| || |||||||    
T  1437986 tatgtttctggatgtttgg-ttatgaaggaatatggaaataaagactcttggattaaattgtac 1438048  T

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Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 2678450 - 2678399
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    ||||||||||||||||| ||||||||||| ||| |||| ||||||| |||||    
T  2678450 gatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgt 2678399  T

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Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 325
Target Start/End: Complemental strand, 2696783 - 2696732
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    ||||||||| |||||||| |||||||||||||| ||||||||| || |||||    
T  2696783 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgt 2696732  T

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Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 336
Target Start/End: Original strand, 7942476 - 7942547
Alignment:
Q  265 atgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtactgtgttcct 336  Q
    ||||| |||||||||||| |||||||| | ||||| |||||| ||||||||| || |||||||  |||||||    
T  7942476 atgttattggatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttcct 7942547  T

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Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9608677 - 9608626
Alignment:
Q  1 agtgttcatactttgggtacagatacttggagaaggataccagacttcccat 52  Q
    ||||||||||||||||| || |||  |||||||||||||| |||||||||||    
T  9608677 agtgttcatactttgggcactgattattggagaaggatacaagacttcccat 9608626  T

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Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 336
Target Start/End: Original strand, 2492038 - 2492144
Alignment:
Q  230 tgagggattgcttgtgcatctttgtaagaaatgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtactg 329  Q
    ||||||||||||||||  | |||| ||  | ||||| | ||||| |||||||| |||||||| | |||||||||  | |||||||||||| ||||||  |    
T  2492038 tgagggattgcttgtgtgtttttgcaactattgataggattttgaatgtttggattatgaaggagtatggaaatcgagagtcttggactaaattgtatag 2492137  T
Q  330 tgttcct 336  Q
    |||||||    
T  2492138 tgttcct 2492144  T

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Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 327
Target Start/End: Complemental strand, 9587249 - 9587183
Alignment:
Q  261 tgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtac 327  Q
    ||||||| || |||| |||||| |||||||| |||||||||||||| || ||||||| | |||||||    
T  9587249 tgatatgcttgtggaggtttggattatgaaggaatatggaaataaagagccttggacaaaattgtac 9587183  T

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Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 188
Target Start/End: Complemental strand, 9587372 - 9587322
Alignment:
Q  138 cattgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgcc 188  Q
    |||||||||||||||||||||||| |||| ||||||||  |||| ||||||    
T  9587372 cattgtttctcttgatttggagaacgagtcgtatcaaaatcttttgctgcc 9587322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 784123 - 784070
Alignment:
Q  1 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatat 54  Q
    |||||| ||||||||||||| ||| ||||||| ||||| | |||||||||||||    
T  784123 agtgtttatactttgggtaccgattcttggaggaggatccaagacttcccatat 784070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 968671 - 968716
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttggacta 319  Q
    |||||||||||||||||| || ||||||||||| |||| |||||||    
T  968671 gatgtttgggttatgaaggaacatggaaataaagagtcatggacta 968716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 2459277 - 2459318
Alignment:
Q  276 tgtttgggttatgaagcaatatggaaataaaaagtcttggac 317  Q
    ||||||| |||||||| |||||||||||||| ||||||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttggac 2459318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 336
Target Start/End: Original strand, 2635711 - 2635783
Alignment:
Q  261 tgatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtactgtgttcct 336  Q
    |||| ||||||||||||||||| ||||| ||   ||||||| | || |||||||||||| ||||||| ||||||||    
T  2635711 tgatgtgtttttggatgtttggattatggag---tatggaagtgaagagtcttggactaaattgtacagtgttcct 2635783  T

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Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 327
Target Start/End: Complemental strand, 7427668 - 7427603
Alignment:
Q  262 gatatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtac 327  Q
    ||||||||||||| | | |||||||||| | |||||||||||||| |||| ||| ||| |||||||    
T  7427668 gatatgtttttgggtatatgggttatgatggaatatggaaataaagagtcgtgggctaaattgtac 7427603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 7430681 - 7430652
Alignment:
Q  135 tgtcattgtttctcttgatttggagaagga 164  Q
    ||||||||||||||||||||||||||||||    
T  7430681 tgtcattgtttctcttgatttggagaagga 7430652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 7443236 - 7443203
Alignment:
Q  75 tggaatatttgtgagtggcactgttaattggatg 108  Q
    ||||||||||||| ||||||||||||||||||||    
T  7443236 tggaatatttgtgggtggcactgttaattggatg 7443203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9587512 - 9587459
Alignment:
Q  1 agtgttcatactttgggtacagatacttggagaaggataccagacttcccatat 54  Q
    |||||| |||||||||||||  |||||||||| ||||| | |||||||||||||    
T  9587512 agtgtttatactttgggtaccaatacttggaggaggatccaagacttcccatat 9587459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Original strand, 43991813 - 43991870
Alignment:
Q  124 agttcttcctgtgtcattgtttctcttgatttggagaaggagttgtatcaaacgcttt 181  Q
    ||||| || |||| ||||||||||||||||||||||| |||||  ||||||| |||||    
T  43991813 agttcctcttgtgccattgtttctcttgatttggagacggagtcttatcaaaagcttt 43991870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 326
Target Start/End: Complemental strand, 1891115 - 1891063
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgta 326  Q
    ||||||||| |||||||| || ||||||||||| | |||||||||| ||||||    
T  1891115 gatgtttggattatgaaggaacatggaaataaagactcttggactaaattgta 1891063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Original strand, 2442038 - 2442090
Alignment:
Q  273 ggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    |||||||||| |||||||| | |||||||||||| | |||||||||| |||||    
T  2442038 ggatgtttggattatgaaggagtatggaaataaagattcttggactaaattgt 2442090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 27755555 - 27755604
Alignment:
Q  139 attgtttctcttgatttggagaaggagttgtatcaaacgctttcgctgcc 188  Q
    ||||||||||||||||||||||||||||||||| ||| |||| |||||||    
T  27755555 attgtttctcttgatttggagaaggagttgtatgaaaagcttgcgctgcc 27755604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 336
Target Start/End: Original strand, 39298967 - 39299039
Alignment:
Q  264 tatgtttttggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgtactgtgttcct 336  Q
    ||||||||| |||||||||||| ||||| ||| |||||||||| |||| ||||||| ||| ||| ||||||||    
T  39298967 tatgttttttgatgtttgggttttgaaggaatgtggaaataaagagtcctggactaaattttacagtgttcct 39299039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 325
Target Start/End: Original strand, 3927063 - 3927110
Alignment:
Q  278 tttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    |||||||||||||| | |||||||||||||| |||||||||| |||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaattgt 3927110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 325
Target Start/End: Complemental strand, 1078212 - 1078160
Alignment:
Q  273 ggatgtttgggttatgaagcaatatggaaataaaaagtcttggactagattgt 325  Q
    ||||||||||||||||||| | |||||||||| | |||| ||||||| |||||    
T  1078212 ggatgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgt 1078160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 51854806 - 51854844
Alignment:
Q  136 gtcattgtttctcttgatttggagaaggagttgtatcaa 174  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  51854806 gtcattgtttctcttgatttggagaatgggttgtatcaa 51854844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 51858465 - 51858503
Alignment:
Q  136 gtcattgtttctcttgatttggagaaggagttgtatcaa 174  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  51858465 gtcattgtttctcttgatttggagaatgagttgtgtcaa 51858503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 315
Target Start/End: Complemental strand, 23896188 - 23896147
Alignment:
Q  274 gatgtttgggttatgaagcaatatggaaataaaaagtcttgg 315  Q
    ||||||||| |||||||| |||||||||||||| ||||||||    
T  23896188 gatgtttggcttatgaaggaatatggaaataaagagtcttgg 23896147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 51829632 - 51829677
Alignment:
Q  136 gtcattgtttctcttgatttggagaaggagttgtatcaaacgcttt 181  Q
    |||||||||||| |||||||  ||||||||| ||||||||||||||    
T  51829632 gtcattgtttcttttgatttacagaaggagtcgtatcaaacgcttt 51829677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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