View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9380_low_8 (Length: 327)
Name: NF9380_low_8
Description: NF9380
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9380_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 34788499 - 34788782
Alignment:
| Q |
19 |
actagggaggtttatgagagagctatagctaatgttcctccagctgaggagaagcgatactggcagcgctatatttatttgtggtacgtttgatttgaat |
118 |
Q |
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||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788499 |
actagggaggtttatgagagagctatagctaatgtacctctagctgaggagaagcgatactggcagcgctatatttatttgtggtacgtttgatttgaat |
34788598 |
T |
|
| Q |
119 |
gctgttttgttgtcggtttgtttatttatcatttagtgattttgcattttctagtggtatttattattttctgcgtgtatcttaggattaattatgcact |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788599 |
gctgttttgttgtcggtttgtttatttatcatttagtgatttttcattttctagtggtatttattattttctgcgtgtatcttaggattaattatgcact |
34788698 |
T |
|
| Q |
219 |
ttatgaagaacttgatgctggagatatggagcgaacaagagatgtgtacaagtaagcagccttttgtgaacttctaagtatttt |
302 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34788699 |
ttatgaagaacttgatgctggagatatggagcaaacaagagatgtgtacaagtaagcagccttttgtgaacttctaagtatttt |
34788782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 2292695 - 2292421
Alignment:
| Q |
19 |
actagggaggtttatgagagagctatagctaatgttcctccagctgaggagaagcgatactggcagcgctatatttatttgtggtacgtttgatttgaat |
118 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2292695 |
actagggaggtttatgagagagctatagccaatgttcctcctgctgaggagaagcgatactggcagcgctatatttatttgtggtatgtttgatttgaat |
2292596 |
T |
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| Q |
119 |
gctgttttgttgtcggtttgtttatttatcatttagtgattttgcattttctagtggtatttattattt-tctgcgtgtatcttaggattaattatgcac |
217 |
Q |
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|||||||||| || |||||||||||||| ||||| |||||||||||||| | |||||||||||||||| |||| || || ||||||||||||||||||| |
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| T |
2292595 |
tctgttttgttatctgtttgtttatttattatttattgattttgcatttttttgtggtatttattatttgtctgtgtataacttaggattaattatgcac |
2292496 |
T |
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| Q |
218 |
tttatgaagaacttgatgctggagatatggagcgaacaagagatgtgtacaagtaagcagccttttgtgaacttc |
292 |
Q |
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| T |
2292495 |
tctatgaagaactcgatgctggagacatggagcgaacaagagacgtgtacaagtaagcagccttttgtgaacttc |
2292421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 2597847 - 2597576
Alignment:
| Q |
19 |
actagggaggtttatgagagagctatagctaatgttcctccagctgaggagaagcgatactggcagcgctatatttatttgtggtacgtttgatttgaat |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||||| |||||||||| ||||||| ||||||||||||| |
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| T |
2597847 |
actatggaggtttatgagagagctatagctaatgttcctctagccgatgagaatcgatactggcagcactatatttatctgtggtatgtttgatttgaat |
2597748 |
T |
|
| Q |
119 |
gctgttttgttgtcggtttgtttatttatcatttagtgattttgcattttctagtggtatttattattt-tctgcgtgtatcttaggattaattatgcac |
217 |
Q |
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||||||| | | |||||||||||||| |||||||||||||||||||||| |||||||||||||||| || ||||| ||| |||||| |||||||| |
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| T |
2597747 |
tttgttttggtagctgtttgtttatttattatttagtgattttgcattttcttgtggtatttattatttgtccatgtgtaactttggattagttatgcac |
2597648 |
T |
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| Q |
218 |
tttatgaagaacttgatgctggagatatggagcgaacaagagatgtgtacaagtaagcagccttttgtgaac |
289 |
Q |
| |
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|||||||||||||| ||| ||||||||| |||||||||||||| ||||||| |||||||||||||| ||||| |
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| T |
2597647 |
tttatgaagaacttaatgttggagatattgagcgaacaagagacgtgtacaggtaagcagccttttctgaac |
2597576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 205 - 268
Target Start/End: Complemental strand, 49279942 - 49279879
Alignment:
| Q |
205 |
attaattatgcactttatgaagaacttgatgctggagatatggagcgaacaagagatgtgtaca |
268 |
Q |
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||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
49279942 |
attaagtatgcactctatgaagagcttgatgctggagatatggagcgagcaagagatgtgtaca |
49279879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 49276469 - 49276428
Alignment:
| Q |
19 |
actagggaggtttatgagagagctatagctaatgttcctcca |
60 |
Q |
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||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49276469 |
actagggaggtttatgagagagctatatctaatgttcctcca |
49276428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 49280026 - 49279985
Alignment:
| Q |
19 |
actagggaggtttatgagagagctatagctaatgttcctcca |
60 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49280026 |
actagggaggtttatgagagagctatatctaatgttcctcca |
49279985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 49276386 - 49276322
Alignment:
| Q |
204 |
gattaattatgcactttatgaagaacttgatgctggagatatggagcgaacaagagatgtgtaca |
268 |
Q |
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|||||||||||||| ||||||||| ||||| || || ||||||||||| ||||||||||||||| |
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| T |
49276386 |
gattaattatgcacgttatgaagagtttgatactagaaatatggagcgagcaagagatgtgtaca |
49276322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 24602212 - 24602253
Alignment:
| Q |
24 |
ggaggtttatgagagagctatagctaatgttcctccagctga |
65 |
Q |
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||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
24602212 |
ggaggtttatgagagagctgtagctaatgttcctccggctga |
24602253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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