View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9381_high_2 (Length: 602)

Name: NF9381_high_2
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9381_high_2
NF9381_high_2
[»] scaffold0031 (1 HSPs)
scaffold0031 (115-168)||(124343-124396)
[»] chr6 (1 HSPs)
chr6 (535-580)||(7310463-7310508)
[»] chr2 (2 HSPs)
chr2 (513-588)||(11316257-11316331)
chr2 (520-570)||(32470300-32470350)
[»] chr8 (3 HSPs)
chr8 (230-283)||(22552201-22552254)
chr8 (533-570)||(32694264-32694301)
chr8 (533-570)||(32797491-32797528)
[»] chr5 (1 HSPs)
chr5 (533-570)||(30858248-30858285)
[»] chr3 (1 HSPs)
chr3 (535-580)||(38241246-38241291)
[»] scaffold0118 (1 HSPs)
scaffold0118 (533-570)||(42646-42683)
[»] chr4 (1 HSPs)
chr4 (404-432)||(33962309-33962337)


Alignment Details
Target: scaffold0031 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 124396 - 124343
Alignment:
Q  115 gtgtttaatttgctgagttgaatataacacttatgaatttgaattcaaattcga 168  Q
    ||||||||||||||||||||||||||| |||||||||||  |||||||||||||    
T  124396 gtgtttaatttgctgagttgaatataaaacttatgaattcaaattcaaattcga 124343  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 535 - 580
Target Start/End: Complemental strand, 7310508 - 7310463
Alignment:
Q  535 gatgatgttgctgttgaattgatgacgatgttgttgctgctattgt 580  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||    
T  7310508 gatgatgttgctgttgaattgatgatgttgttgttgctgctattgt 7310463  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 513 - 588
Target Start/End: Complemental strand, 11316331 - 11316257
Alignment:
Q  513 atggttcattttgataactagtgatgatgttgctgttgaattgatgacgatgttgttgctgctattgtataatctg 588  Q
    |||||| |||||||||  | |||||||||||| |||||||||||||| | |||||||| ||||||||| |||||||    
T  11316331 atggtttattttgatagatggtgatgatgttgttgttgaattgatgatgttgttgttg-tgctattgtttaatctg 11316257  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 520 - 570
Target Start/End: Original strand, 32470300 - 32470350
Alignment:
Q  520 attttgataactagtgatgatgttgctgttgaattgatgacgatgttgttg 570  Q
    |||||||||  | |||||||||||| |||||||||||||| ||||||||||    
T  32470300 attttgatagatggtgatgatgttgttgttgaattgatgatgatgttgttg 32470350  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 283
Target Start/End: Complemental strand, 22552254 - 22552201
Alignment:
Q  230 ggcgttggggttacgactgcgactgcagcgtttgttgcggtggttggaagggga 283  Q
    |||||||||||||||||| ||||  |  ||||||||||||||||||||||||||    
T  22552254 ggcgttggggttacgactacgacgacgacgtttgttgcggtggttggaagggga 22552201  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 533 - 570
Target Start/End: Complemental strand, 32694301 - 32694264
Alignment:
Q  533 gtgatgatgttgctgttgaattgatgacgatgttgttg 570  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  32694301 gtgatgatgttgctgttgaattgatgatgatgttgttg 32694264  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 533 - 570
Target Start/End: Complemental strand, 32797528 - 32797491
Alignment:
Q  533 gtgatgatgttgctgttgaattgatgacgatgttgttg 570  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  32797528 gtgatgatgttgctgttgaattgatgatgatgttgttg 32797491  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 533 - 570
Target Start/End: Complemental strand, 30858285 - 30858248
Alignment:
Q  533 gtgatgatgttgctgttgaattgatgacgatgttgttg 570  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  30858285 gtgatgatgttgctgttgaattgatgatgatgttgttg 30858248  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 535 - 580
Target Start/End: Complemental strand, 38241291 - 38241246
Alignment:
Q  535 gatgatgttgctgttgaattgatgacgatgttgttgctgctattgt 580  Q
    |||||||||| |||||||||||||| | ||||||||||||||||||    
T  38241291 gatgatgttgttgttgaattgatgatgttgttgttgctgctattgt 38241246  T

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Target: scaffold0118 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 533 - 570
Target Start/End: Complemental strand, 42683 - 42646
Alignment:
Q  533 gtgatgatgttgctgttgaattgatgacgatgttgttg 570  Q
    |||||||||||| |||||||||||||| ||||||||||    
T  42683 gtgatgatgttgttgttgaattgatgatgatgttgttg 42646  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 432
Target Start/End: Complemental strand, 33962337 - 33962309
Alignment:
Q  404 aaaaaatgggggagattgcagcatttgtt 432  Q
    |||||||||||||||||||||||||||||    
T  33962337 aaaaaatgggggagattgcagcatttgtt 33962309  T

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