View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9381_high_27 (Length: 228)

Name: NF9381_high_27
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9381_high_27
NF9381_high_27
[»] chr7 (3 HSPs)
chr7 (11-228)||(34500429-34500647)
chr7 (11-125)||(36828547-36828662)
chr7 (11-125)||(37617198-37617313)
[»] chr4 (2 HSPs)
chr4 (37-228)||(44429180-44429373)
chr4 (11-125)||(44421023-44421138)
[»] chr1 (3 HSPs)
chr1 (39-177)||(3170806-3170946)
chr1 (37-125)||(8114114-8114204)
chr1 (172-228)||(3182828-3182884)
[»] scaffold0044 (1 HSPs)
scaffold0044 (39-125)||(83310-83398)
[»] chr2 (3 HSPs)
chr2 (31-108)||(8148961-8149036)
chr2 (31-108)||(8153585-8153660)
chr2 (37-164)||(24835855-24835980)
[»] chr5 (1 HSPs)
chr5 (55-110)||(28171595-28171652)
[»] chr3 (1 HSPs)
chr3 (28-99)||(2993869-2993942)


Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 34500429 - 34500647
Alignment:
Q  11 tattaagaataggcagacaattaacgggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattt 108  Q
    ||||||||||||  || |||||| | ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  34500429 tattaagaatagcaag-caattagctggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaattt 34500527  T
Q  109 ttataaccaataatgagcttttactattcccggtatgaaaggcacgaaccgggtcgcatggttaaaaacgggttacatggctgaaatgggttgaaaacac 208  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  34500528 ttataaccaataatgagcttttattattcccggtaagaaaggcacgaaccgggtcgcatgggtaaaaacgggtcacatggctgaaatgggttgaaaacac 34500627  T
Q  209 agtcgttttgctctcttttc 228  Q
    ||||||||||||||||||||    
T  34500628 agtcgttttgctctcttttc 34500647  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 36828547 - 36828662
Alignment:
Q  11 tattaagaataggcagacaattaacgggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattt 108  Q
    ||||||||||||  || |||||| | ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  36828547 tattaagaatagcaag-caattagctggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaattt 36828645  T
Q  109 ttataaccaataatgag 125  Q
    |||||||||||||||||    
T  36828646 ttataaccaataatgag 36828662  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 37617313 - 37617198
Alignment:
Q  11 tattaagaataggcagacaattaacgggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattt 108  Q
    ||||||||||||  ||| ||||| | ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  37617313 tattaagaatagcaaga-aattagctggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaattt 37617215  T
Q  109 ttataaccaataatgag 125  Q
    |||||||||||||||||    
T  37617214 ttataaccaataatgag 37617198  T

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Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 44429180 - 44429373
Alignment:
Q  37 ggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgagcttttacta 134  Q
    ||||||||||||||||| ||||||||||||||||  || |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||    
T  44429180 ggcacattcattgtatgacttttcagcaagcaatatggatcaacgaaatcataaataagcatttattttaatttttataaccaataatgagcttctatta 44429279  T
Q  135 ttcccggtatgaaaggcacgaaccgggtcgcatggttaaaaacgggttacatggctgaaatgggttgaaaacacagtcgttttgctctcttttc 228  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||    
T  44429280 ttcccggtatgaaaggcacgaaccgggttgcatgggtaaaaacgggtcacacggctgaaatgggttgaaaacacagtcgttatgctctcttttc 44429373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 44421023 - 44421138
Alignment:
Q  11 tattaagaataggcagacaattaacgggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattt 108  Q
    ||||||||||||  || |||||| | ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  44421023 tattaagaatagcaag-caattagctggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaattt 44421121  T
Q  109 ttataaccaataatgag 125  Q
    |||||||||||||||||    
T  44421122 ttataaccaataatgag 44421138  T

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Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 39 - 177
Target Start/End: Original strand, 3170806 - 3170946
Alignment:
Q  39 cacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgagcttttactatt 136  Q
    ||||||||||||||| ||||||||||||||||  ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  3170806 cacattcattgtatgacttttcagcaagcaatatgggtcaaagaaatcataaataagcatttactttaatttttataaccaataatgagcttttattatt 3170905  T
Q  137 cccggtatgaaaggcacgaaccgggtcgcatggttaaaaac 177  Q
    ||||||||||||| ||||||||||||||||||| |||||||    
T  3170906 cccggtatgaaagtcacgaaccgggtcgcatgggtaaaaac 3170946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 8114204 - 8114114
Alignment:
Q  37 ggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgag 125  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8114204 ggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaatttttataaccaataatgag 8114114  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 3182828 - 3182884
Alignment:
Q  172 aaaaacgggttacatggctgaaatgggttgaaaacacagtcgttttgctctcttttc 228  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  3182828 aaaaacgggtcacatggctgaaatgggttgaaaacacaatcgttttgctctcttttc 3182884  T

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Target: scaffold0044 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 83398 - 83310
Alignment:
Q  39 cacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgag 125  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  83398 cacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaatttttataaccaataatgag 83310  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 8149036 - 8148961
Alignment:
Q  31 ttaacgggcacattcattgtatggcttttcagcaagcaatgggtcaacgaaatcataaatatgcatttattttaattt 108  Q
    ||||| |||||||||||||| || |||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  8149036 ttaactggcacattcattgtgtgacttttcagcaagcaatg--tcaaagaaatcataaatatgcatttattttaattt 8148961  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 8153660 - 8153585
Alignment:
Q  31 ttaacgggcacattcattgtatggcttttcagcaagcaatgggtcaacgaaatcataaatatgcatttattttaattt 108  Q
    ||||| |||||||||||||| || |||||||||||||||||  |||| ||||||||||||||||||||||||||||||    
T  8153660 ttaactggcacattcattgtgtgacttttcagcaagcaatg--tcaaagaaatcataaatatgcatttattttaattt 8153585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 164
Target Start/End: Complemental strand, 24835980 - 24835855
Alignment:
Q  37 ggcacattcattgtatggcttttcagcaagca-atgggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgagcttttactat 135  Q
    |||||||||||||  ||  | ||||||||||| ||||||||||||||||||||||| |||||| ||||  |||||| ||||||||| ||||||||| |||    
T  24835980 ggcacattcattgcgtgagtattcagcaagcatatgggtcaacgaaatcataaataagcatttttttt--tttttaaaaccaataacgagcttttattat 24835883  T
Q  136 tcccggtatgaaaggcacgaaccgggtcg 164  Q
     |||   ||| || |||||||||||||||    
T  24835882 ccccataatg-aatgcacgaaccgggtcg 24835855  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 28171652 - 28171595
Alignment:
Q  55 cttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattttt 110  Q
    ||||||||||||||||  ||||||||||||||||||||| |  ||||||||| |||||    
T  28171652 cttttcagcaagcaatatgggtcaacgaaatcataaataagattttattttatttttt 28171595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 2993869 - 2993942
Alignment:
Q  28 caattaacgggcacattcattgtatggcttttcagcaagca--atgggtcaacgaaatcataaatatgcattta 99  Q
    |||||| | ||||||||| |||| || ||||||||||||||  |||| |||| |||||||||||||| ||||||    
T  2993869 caattagctggcacattcgttgtgtgacttttcagcaagcaatatggatcaaagaaatcataaatatacattta 2993942  T

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