View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_high_3 (Length: 576)
Name: NF9381_high_3
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 2 - 557
Target Start/End: Original strand, 49064411 - 49064966
Alignment:
| Q |
2 |
gagggagaattcatttgaaagaaaaaggtagtataagatgcaaagggaaacgtcaacaacgaatggggacatggtgtccttgctgatagacgtttaagta |
101 |
Q |
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| T |
49064411 |
gagggagaattcatttgaaagaaaaaggtagtataagatgcaaagggaaacgtcaacaacgaatggggacatggtgtccttgctgatagacgtttaagta |
49064510 |
T |
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| Q |
102 |
cataagaagtttgtttggtattggtaacattcatgtacatgacaaaccataatgtttggctctgtctccnnnnnnnatcatgcgtgattgcatcacttat |
201 |
Q |
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| T |
49064511 |
aataagaagtttgtttggtattggtaacattcatgtacatgacaaaccataatgtttggctctgtctcctttttttatcatgcgtgattgcatcacttat |
49064610 |
T |
|
| Q |
202 |
ttttggtcctcttgatacgcccaaaggccaacaccaaacgataccttattgctcaattccaagactataatgcctcaaatacaatatatgtctgtctcta |
301 |
Q |
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| T |
49064611 |
ttttggtcctcttgatacgcccaaaggccaaaaccaaacgataccttattgctcaattccaagactataatgcctcaaatacaatatatgtctgtctcta |
49064710 |
T |
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| Q |
302 |
tacgagcacataccacatgcctcatttaaattgttgatgttgatgatagaaacactcgactactacttgtttgtgttgtgggccatttttatcaatgcat |
401 |
Q |
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| T |
49064711 |
tacgagcacataccacatgcctcatttaaattgttgatgttgatgatagaaacactcgactactacttgtttgtgttgtgggccatttttatcaatgcat |
49064810 |
T |
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| Q |
402 |
gagtctttgtctatccagccacccacacggtcatactcatctacagaattttcaatctcaatcaaaactatttgttactatatgaagcacaacaattcca |
501 |
Q |
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| T |
49064811 |
gagtctttgtctatccagccacccacacggtcatactcatctacagaattttcaatctcaatcaaaactatttgttactatatgaagcacaacaattcca |
49064910 |
T |
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| Q |
502 |
ttaatttttctgacatttgaaaaaacataaatttaaccttatattaaaaagaatac |
557 |
Q |
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| T |
49064911 |
ttaatttttctgacatttgaaaaaacataaatttaaccttatattaaaaagaatac |
49064966 |
T |
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