View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_high_6 (Length: 417)
Name: NF9381_high_6
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 5099113 - 5099495
Alignment:
| Q |
18 |
cctagattgaacctagtaggtactatgttcttagcaaatttctggtagagcattcataatattgtattttgattttcatggcgtagtgtgatttactaga |
117 |
Q |
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| T |
5099113 |
cctagattgaacctagtaggtactatgttcttagcaaatttctggtagagcattcataatattgtattttgattttcatggcgtagtgtgatttactaga |
5099212 |
T |
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| Q |
118 |
catgccagctgttgggcagctggagaaggatgccaaatatgcattgttatatatttttaatgtaaaagattttacacattcaaacataataaactgtttg |
217 |
Q |
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| T |
5099213 |
catgccagc-----------tggagaaggatgccaaatatgcattgttatatatttttaatgtaaaagattttacacattcaaacataataaactgtttg |
5099301 |
T |
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| Q |
218 |
actttaattgaatgaatcatcggtccctaaattatcacactttcaccaatttagtgtctaagctataacaacatacgaaatagttccgaaacaatctaaa |
317 |
Q |
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| T |
5099302 |
actttaattgaatgaatcatcagtccctaaattatcacactttcaccaatttagtgtctaaactataacaacatacgaaatagttcctaaactatctaaa |
5099401 |
T |
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| Q |
318 |
atccatcaataaactataacaacataccaaatagttcctaaactatctaaaatccatcaatctagtccttggtatcatgatgttactgaattga |
411 |
Q |
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| T |
5099402 |
atccatcaataaactataacaacataccaaatagttcctaaactatctaaaatccatcaatctagtccttggtatcatgatgttactgaattga |
5099495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 5056183 - 5056289
Alignment:
| Q |
63 |
tagagcattcataatattgtattttgattttcatggcgtagtgtgatttactagacatgccagctgttgggcagctggagaaggatgccaaatatgcatt |
162 |
Q |
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| T |
5056183 |
tagagcattcatgaatttgtattttgattttcatgttgtagtgtgatttactggacatgcctgctgttgggcaactggagaatgatgccaaatatgctct |
5056282 |
T |
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| Q |
163 |
gttatat |
169 |
Q |
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| T |
5056283 |
gttatat |
5056289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 36191178 - 36191072
Alignment:
| Q |
63 |
tagagcattcataatattgtattttgattttcatggcgtagtgtgatttactagacatgccagctgttgggcagctggagaaggatgccaaatatgcatt |
162 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| | |
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| T |
36191178 |
tagagcattcataaatttgtattttgattttcatgttgtagtgtgatttactggacatgcctgctgttgggcaactggagaatgatgccaaatatgctct |
36191079 |
T |
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| Q |
163 |
gttatat |
169 |
Q |
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||||||| |
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| T |
36191078 |
gttatat |
36191072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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