View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9381_high_8 (Length: 387)
Name: NF9381_high_8
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 759217 - 759573
Alignment:
| Q |
1 |
gagaaccatatattctttgatactatcaggggaatggagttcttttggcgtgacattagaggttgataaaacagaggggattgtgatatcaaagagagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
759217 |
gagaaccatatattctttgatactatcaggggaatggagttcttttggcgtgacattagaggttgataaaacagaggggattgtgatatcaaagagagag |
759316 |
T |
|
| Q |
101 |
atatcaggtaatttgttgggaaagatatcagggaatttgtttatactgcttacgatgtggtggtggcacgagattgacaagcgaaggtggttctttgcaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
759317 |
atatcaggtaatttgttgggaaagatatcagggaatttgtttatactgcttacgatgaggtggtggcacgggattgacaagcgaaggtggttctttgcaa |
759416 |
T |
|
| Q |
201 |
aattgggatcggagactatagaattaaaggacttgcagacacatcgaagtagaaggagtttcttcattgatagcttatagaggatctcagagatgagatc |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
759417 |
aattgggatcggagactatagaattgaaggacttgcaaacacatcgaagtagaaggagtttcttcactgatagcttatagaggatctcagagatgagatc |
759516 |
T |
|
| Q |
301 |
aaagggaagagtgagtattggcggcttggatattagggctctggcggaggtagcata |
357 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
759517 |
aaagggaagagtgagtattgacggctcggatattaggtctctggcggaggtagcata |
759573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 250
Target Start/End: Original strand, 23231706 - 23231784
Alignment:
| Q |
172 |
gattgacaagcgaaggtggttctttgcaaaattgggatcggagactatagaattaaaggacttgcagacacatcgaagt |
250 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||||||||| |||| || | ||| |||||||| | || |||||||||| |
|
|
| T |
23231706 |
gattgataagcgaaggtgtttctttgcgaaattgggatcagagattagggtattgaaggacttactgagacatcgaagt |
23231784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 12217388 - 12217323
Alignment:
| Q |
174 |
ttgacaagcgaaggtggttctttgcaaaattgggatcggagactatagaattaaaggacttgcaga |
239 |
Q |
| |
|
||||||||||||| || |||| |||||| |||||||| |||| || |||||| |||||||| |||| |
|
|
| T |
12217388 |
ttgacaagcgaagatgtttctctgcaaatttgggatcagagattaaagaattgaaggacttacaga |
12217323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 27755003 - 27754938
Alignment:
| Q |
174 |
ttgacaagcgaaggtggttctttgcaaaattgggatcggagactatagaattaaaggacttgcaga |
239 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || |||||||||| || ||||||||||||||| |||| |
|
|
| T |
27755003 |
ttgacaagcgaaggtgtttcttggcaaattttggatcggagattaaagaattaaaggacttacaga |
27754938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 259
Target Start/End: Original strand, 24418155 - 24418240
Alignment:
| Q |
174 |
ttgacaagcgaaggtggttctttgcaaaattgggatcggagactatagaattaaaggacttgcagacacatcgaagtagaaggagt |
259 |
Q |
| |
|
|||||||||||||||| || ||||| || |||||||| |||| || ||||| ||||||||||||| ||| |||||| |||||||| |
|
|
| T |
24418155 |
ttgacaagcgaaggtgcttgtttgcgaatttgggatcagagattaatgaattgaaggacttgcagagacagcgaagttgaaggagt |
24418240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 20305211 - 20305150
Alignment:
| Q |
174 |
ttgacaagcgaaggtggttctttgcaaaattgggatcggagactatagaattaaaggacttg |
235 |
Q |
| |
|
|||||||||||||||| ||||| || || |||||||||| || || |||||| ||||||||| |
|
|
| T |
20305211 |
ttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagagaattgaaggacttg |
20305150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 20309615 - 20309554
Alignment:
| Q |
174 |
ttgacaagcgaaggtggttctttgcaaaattgggatcggagactatagaattaaaggacttg |
235 |
Q |
| |
|
|||||||||||||||| ||||| || || |||||||||| || || |||||| ||||||||| |
|
|
| T |
20309615 |
ttgacaagcgaaggtgcttcttggcgaatttgggatcggtgattagagaattgaaggacttg |
20309554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University