View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_10 (Length: 446)
Name: NF9381_low_10
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 320
Target Start/End: Original strand, 47211705 - 47212012
Alignment:
| Q |
13 |
agaagcaaaggtcattggggttggaggatatctctgggattgggaggtatcccagcattactcctcactttaggggcttacttggtagtggacaccccaa |
112 |
Q |
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| T |
47211705 |
agaatcaaaggtcattggggttggaggatatctctgggattgggaggtatcccagcattactcctcactttaggggcttacttggtagtggacaccccaa |
47211804 |
T |
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| Q |
113 |
atagtctcattgaacgtggtcacttggacaaaggaaaagctgttctgagaaagattcgtggcacggacaacattgaacccgagttcttagagttagtaga |
212 |
Q |
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| T |
47211805 |
atagtctcattgaacgtggtcacttggacaaaggaaaagctgttctgagaaagattcgtggcacggacaacattgaacccgagttcttagagttagtaga |
47211904 |
T |
|
| Q |
213 |
agcaagtcgtgttgctaaagaggtgaaacatccattcagaaatctcctcaagcgcaatatccgacctcaacttgtcatttccattgctctaatggtttgt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
47211905 |
agcaagtcgtgttgctaaagaggtgaaacatccattcagaaatctcctcaagcgcaataaccgacctcaacttgtcatttccattgctctaatggtttgt |
47212004 |
T |
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| Q |
313 |
actaatct |
320 |
Q |
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|||||||| |
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| T |
47212005 |
actaatct |
47212012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 95 - 296
Target Start/End: Complemental strand, 749299 - 749098
Alignment:
| Q |
95 |
tggtagtggacaccccaaatagtctcattgaacgtggtcacttggacaaaggaaaagctgttctgagaaagattcgtggcacggacaacattgaacccga |
194 |
Q |
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| T |
749299 |
tggttgtggacacccccaacagtctcattgagcgtggtcgccttgaagaaggaaaagctgtacttaaaaagattcgtggcactgacaacattgaacccga |
749200 |
T |
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| Q |
195 |
gttcttagag-ttagtagaagcaagtcgtgttgctaaagaggtgaaacatccattcagaaatctcctcaagcgcaatatccgacctcaacttgtcatttc |
293 |
Q |
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| T |
749199 |
gttcttggagctttgt-gaggcaagtcgtgttgctaaagaggtcaagcacccttttaggaatcttctcaaacgcaagaaccgacctcaacttatcatttc |
749101 |
T |
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| Q |
294 |
cat |
296 |
Q |
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||| |
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| T |
749100 |
cat |
749098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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