View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_12 (Length: 444)
Name: NF9381_low_12
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 42316819 - 42316402
Alignment:
| Q |
19 |
agatcggagggtcgatttatcatcactagacacattggtacacgtttctcgcataatgacctttgga------tattcaagagagattttactgtgtcta |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42316819 |
agataggagggtcgatttatcatcactagacacattggtacacgtttctcccataatgacctttggaataagatattcaagagagattttactgtgtcta |
42316720 |
T |
|
| Q |
113 |
tgcatgtatcaaaaatcagattttcgacaaataattaaaaagtttagattgcaaatgtcacttttgataaacttattcannnnnnnnnnnnnnnattgaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42316719 |
tgcatgtatcaaaaatcagattttcgacaaataattaaaaagtttagattgcaaatgtcacttttgataaacttattcatttttaattttttttattgaa |
42316620 |
T |
|
| Q |
213 |
attgtcgattcttggcaattgagaatgatgccaacaaaacaagagtcgtgtccatcatgtaatgtaattgatgcgtggagtgggatgaaagatgtttgtt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42316619 |
attgtcgattcttggcaattgagaatgatgccaacaaaacaagagtcgtgtccatcatgtaatgtaattgatgcgtggagtgggatgaaagatgtttgtt |
42316520 |
T |
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| Q |
313 |
tgtctctttgcattaaattggtctttgcttgttatggttttcttgtaggccatacatacacccatatatccgtatacctttcattttgagtttgacattc |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42316519 |
tgtctctttgcattaaattggtctttgcttgttatggttttcttgtaggcca----tacacccatatatccgtatccctttcattttgagtttgacattc |
42316424 |
T |
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| Q |
413 |
ttggctattatatttacctttg |
434 |
Q |
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|||||||||||||||||||||| |
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| T |
42316423 |
ttggctattatatttacctttg |
42316402 |
T |
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