View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_18 (Length: 407)
Name: NF9381_low_18
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 60 - 390
Target Start/End: Complemental strand, 11723801 - 11723467
Alignment:
| Q |
60 |
agtgaagtatataagttttatgtagacaaagtttctttttaaagtttaaatatcgtaaatacaaattttctaaaatannnnnnnnnatttcttaataaat |
159 |
Q |
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| T |
11723801 |
agtgaagtatataagttttatgtagataaagtttctttttaaagtttaaatatcgtaaatacaaattttctaaaatatttttttttatttcttaataaat |
11723702 |
T |
|
| Q |
160 |
accctgaagatatttgttggctttttcattgaagtaaaagagagaaattttgaaattttgaaattgtgacaaatattttcaatgctactc----tctcac |
255 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||| |
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| T |
11723701 |
accccaaagatatttgttggctttttcattgaagtaaaagagagaaattttgaaattgtcaaattgtgacaaatattttcaatgctactcactctctcac |
11723602 |
T |
|
| Q |
256 |
ataagactaataactccatcccaaaaggttggataacagaacataaacacttgtaaagacaatgagttccaaaatcaacaaccaaccacaggttatactt |
355 |
Q |
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| T |
11723601 |
ataagactaataactccttcccaaaaggttggataacagaacagaaacacttgtaaagacaatgagttccaaaatcaacaaccaaccacaggttatattt |
11723502 |
T |
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| Q |
356 |
ttcatcatgtcatgtttattttctcacacaatttc |
390 |
Q |
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| T |
11723501 |
ttcatcatgtcatgtttattttctcacacaatttc |
11723467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 11723855 - 11723821
Alignment:
| Q |
5 |
ttcttaaggattcaaaaaaggaaatagtatataag |
39 |
Q |
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| T |
11723855 |
ttcttaaggattcaaaataggaaatagtatataag |
11723821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 339 - 391
Target Start/End: Complemental strand, 27438941 - 27438889
Alignment:
| Q |
339 |
aaccacaggttatacttttcatcatgtcatgtttattttctcacacaatttca |
391 |
Q |
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| T |
27438941 |
aaccacaggttatacttttcatcatgtcatgtttattttctcacacaatttca |
27438889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 303
Target Start/End: Complemental strand, 27439010 - 27438939
Alignment:
| Q |
235 |
ttttcaatgctactctctcacataagactaataa---ctccatcccaaaaggttggataacagaacataaac |
303 |
Q |
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|||||||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||| |||| |
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| T |
27439010 |
ttttcaatgctaaactctcacataaaactaataataactccttcccaaaaggttggataacagaacagaaac |
27438939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 1302517 - 1302550
Alignment:
| Q |
72 |
aagttttatgtagacaaagtttctttttaaagtt |
105 |
Q |
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| T |
1302517 |
aagttttatgtagaaaaagtttctttttaaagtt |
1302550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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