View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_21 (Length: 369)
Name: NF9381_low_21
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_21 |
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| [»] scaffold0198 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 13 - 363
Target Start/End: Complemental strand, 45744526 - 45744181
Alignment:
| Q |
13 |
ggttaataacacaagataagttaagttgcattcttgtaggtcacttggattgagcactgggagtatgatgagagtattgttcaccaactctatcgtccgt |
112 |
Q |
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| T |
45744526 |
ggttaataacacaagataagtt-----gcactcttgtaggtcacttggattgagcactgggagtatgatgagagtattgttcaccaactctatcgtccgt |
45744432 |
T |
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| Q |
113 |
tgctcatttccggttttggatttggcgctcatagatggatcgccaccctccaaaggcagtgtgaaggcttggctatcctcatgtcctcttccatctcaaa |
212 |
Q |
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| T |
45744431 |
tgctcatttccggttttggatttggcgctcatagatggatcgccaccctccaaaggcagtgtgaaggcttggctatcctcatgtcctcttccatctcaaa |
45744332 |
T |
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| Q |
213 |
tgatgatcacaccggtaaaacaaatcacatgcatgaatttaaatcgttatattttctaatcacttgttaactactaattaaatggtgtaaatttggcatt |
312 |
Q |
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| T |
45744331 |
tgatgatcacaccggtaaaacaaatcacatgcatgaatttaaatcgttatattttctaatcatttgttaactactaattaaatggtgtaaatttggcatt |
45744232 |
T |
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| Q |
313 |
ttgattttgcagccttgagccaagctggtcgaagaagcatgttgaagctgg |
363 |
Q |
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| T |
45744231 |
ttgattttgcagccttgagccaagctggtcgaagaagcatgttgaagctgg |
45744181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0198 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0198
Description:
Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 176
Target Start/End: Complemental strand, 7697 - 7597
Alignment:
| Q |
76 |
tatgatgagagtattgttcaccaactctatcgtccgttgctcatttccggttttggatttggcgctcatagatggatcgccaccctccaaaggcagtgtg |
175 |
Q |
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| T |
7697 |
tatgatgagagtgttgtccaccaagcctatcgtccattggttaattccggcatggcatttggtgctcatagatgggttgcaactctccagaggcagtgtg |
7598 |
T |
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| Q |
176 |
a |
176 |
Q |
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| T |
7597 |
a |
7597 |
T |
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