View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_25 (Length: 357)
Name: NF9381_low_25
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 6814464 - 6814128
Alignment:
| Q |
1 |
gatcttgccatggggcatggtgttggtacaaggttgttactttgttaaaatctgctggacacgatgtcacagcactagacatggctgcttctggaatcca |
100 |
Q |
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| T |
6814464 |
gatcttgccatggggcatggtgttggtacaagattattgctctgttaaaatctgctggacacgaagtcacagcactagacatggctgcttctggaatcca |
6814365 |
T |
|
| Q |
101 |
tccaaagcaagtgcatgagctggattctgtcacagattattgtgaaccgttgattgaatttctaaggtcactgccacaagatgagagagttattctagtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6814364 |
tccaaagcaagtgcatgagctggattctgtcacagattattatgaaccgttgattgaatttctaaggtcactgccacaagatcagagagttattctagtg |
6814265 |
T |
|
| Q |
201 |
ggtcatagcttgggtgggatgtgtatatctgtggccatggaattatttccaaagaaaattgcagctgctgtatttgttacagctttcatgccttctcctg |
300 |
Q |
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| T |
6814264 |
ggtcatagcttgggtgggatgtgtatatctgtggccatggaattatttccaaagaaaattgcagctgctgtatttgttacagctttcatgccttctcctg |
6814165 |
T |
|
| Q |
301 |
atctaagttacttgagtctactccaagaggtacttga |
337 |
Q |
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| T |
6814164 |
atctaagctacttgagtctactccaagaggtacttga |
6814128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 6807679 - 6807342
Alignment:
| Q |
1 |
gatcttgccatggggcatggtgttggtacaaggttgttactttgttaaaatctgctggacacgatgtcacagcactagacatggctgcttctggaatcca |
100 |
Q |
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| T |
6807679 |
gatcttgccatggggcatggtgttggtacaagattattgctctgttaaaatctgctggacacgaagtcacagcactagacatggctgcttctggaatcca |
6807580 |
T |
|
| Q |
101 |
tccaaagcaagtgcatgagctggattctgtcacagattattgtgaaccgttgattgaatttctaaggtcactgccacaagatgagagagttattctagtg |
200 |
Q |
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| T |
6807579 |
tccaaagcaagtgcatgagctggattctgtcacatattattatgaaccgttgattgaatttctaaggtcactgcgacaagatcagagagttattctagtg |
6807480 |
T |
|
| Q |
201 |
ggtcatagcttgggtgggatgtgtatatctgtggccatggaattatttccaaagaaaattgcagctgctgtatttgttacagctttcatgccttctcctg |
300 |
Q |
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| T |
6807479 |
ggtcatagcttgggtgggatgtgtatatctgtggccatggaattatttccaaagaaaattgcagctgctgtatttgttacagctttcatgccttctcctg |
6807380 |
T |
|
| Q |
301 |
atctaagttacttgagtctactccaagaggtacttgat |
338 |
Q |
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| T |
6807379 |
atctaagctacttgagtctactccaagaggtacttgat |
6807342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 334
Target Start/End: Complemental strand, 6823658 - 6823328
Alignment:
| Q |
4 |
cttgccatggggcatggtgttggtacaaggttgttactttgttaaaatctgctggacacgatgtcacagcactagacatggctgcttctggaatccatcc |
103 |
Q |
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||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
6823658 |
cttgccatggggcatggtgttggtacaagataattactctgttaaaatctgctggacacgaagtcacatcactagacatggctgcttctggaatccatcc |
6823559 |
T |
|
| Q |
104 |
aaagcaagtgcatgagctggattctgtcacagattattgtgaaccgttgattgaatttctaaggtcactgccacaagatgagagagttattctagtgggt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6823558 |
aaagcaagtgcatgagctggattctgtcacagattattatgaaccgttgattgaatttctaaggtcactgccacaagatcagagagttattctagtgggt |
6823459 |
T |
|
| Q |
204 |
catagcttgggtgggatgtgtatatctgtggccatggaattatttccaaagaaaattgcagctgctgtatttgttacagctttcatgccttctcctgatc |
303 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6823458 |
catagcttaggtgggatgtgtatatctgtggccatggaattatttcctaagaaaattgcagctgctgtatttgtcacagctttcatgccttctcctgatc |
6823359 |
T |
|
| Q |
304 |
taagttacttgagtctactccaagaggtact |
334 |
Q |
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|||| | | ||| ||| |||||||||||||| |
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| T |
6823358 |
taagcttcctgactcttctccaagaggtact |
6823328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 1769024 - 1768923
Alignment:
| Q |
8 |
ccatggggcatggtgttggtacaaggttgttactttgttaaaatctgctggacacgatgtcacagcactagacatggctgcttctggaatccatccaaag |
107 |
Q |
| |
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|||||| |||||||||||||| ||||||| ||| ||||||| ||||| || | ||||||||||||||||||||||||| ||| | | |||||||| |
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| T |
1769024 |
ccatggtgcatggtgttggtataaggttgcaactgatctaaaatcagctggtcataaagtcacagcactagacatggctgcttgtggtaccaatccaaag |
1768925 |
T |
|
| Q |
108 |
ca |
109 |
Q |
| |
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|| |
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|
| T |
1768924 |
ca |
1768923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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