View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_28 (Length: 344)
Name: NF9381_low_28
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 329
Target Start/End: Complemental strand, 18897147 - 18896821
Alignment:
| Q |
13 |
tgagaaattcttgtgtgcaaacaaacataacacatcatcctatacaaacaaccaatcagaaatttttgtttaataaaattaaaattaaa------taata |
106 |
Q |
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| T |
18897147 |
tgagaaattcttgtgtgcaaacaaacataacacgtcatcctatacaaacaaccaatcaaaaaattttgtttaataaaattaaaattaaaattaaataata |
18897048 |
T |
|
| Q |
107 |
gacacgttctttcctcagcatgtttggagcagnnnnnnnnnnnnn---cctacctttttctttcaacatgatctttccttcttgttcccgctccttaaa- |
202 |
Q |
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| T |
18897047 |
gacacgttctttcctcagcatgtttggagcagttttttttttttttttcctacctttttctttcaacatgatctttccttcttgttcccgctccttaaaa |
18896948 |
T |
|
| Q |
203 |
ctcaaccgtttcnnnnnnnatctcttcattgtatctatcgttcttgtgctcaggatatgactttcatattgatggttgatttctccctcatagcaagcac |
302 |
Q |
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| T |
18896947 |
ctcaaccgtttctttttttatctcttcattgtatctatcgttcttgtgctcaggatatgactttcatattgatggttgatttttccctcatagtaagcac |
18896848 |
T |
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| Q |
303 |
tttccattaacatttcaacaaaggatc |
329 |
Q |
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| T |
18896847 |
tttccattaacatttcaacaaaggatc |
18896821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 18891894 - 18892008
Alignment:
| Q |
14 |
gagaaattcttgtgtgcaaacaaacataacacatcatcctatacaaacaaccaatcagaaatttttgtttaataaa------attaaaattaaataatag |
107 |
Q |
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| T |
18891894 |
gagaaattcttgtgtgcaaacaaacataacacgtcatcctatacaaacaaccaatcaaaaatttttgtttaataaaattaaaattaaaattaaataatag |
18891993 |
T |
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| Q |
108 |
acacgttctttcctc |
122 |
Q |
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| T |
18891994 |
acacgttctatcctc |
18892008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 329
Target Start/End: Complemental strand, 49265163 - 49264836
Alignment:
| Q |
10 |
ttttgagaaattcttgtgtgcaaacaaacataacacatcatcctatacaaacaaccaatcagaaatttttgtttaataaaattaaaattaaat-----aa |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||| || |
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| T |
49265163 |
ttttgagaaattcttgtgtgcaaacaaacataacatgtcatcctatacaaacaaccaatcaaaattttttgtttaataaaattaaaattaaattaaataa |
49265064 |
T |
|
| Q |
105 |
tagacacgttctttcctcagcatgtttggagcagnnnnnnnnnnnnnc--ctacctttttctttcaacatgatctttccttcttgttcccgctccttaaa |
202 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49265063 |
tagacacgttctttcctcaacatgtttggagcagcttttttttttcttttctacctttttctttcaacatgatctttccttcttgttcccgcttcttaaa |
49264964 |
T |
|
| Q |
203 |
-ctcaaccgtttcnnnnnnnatctcttcattgtatctatcgttcttgtgctcaggatatgactttcatattgatggttgatttctccctcatagcaagca |
301 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49264963 |
actcaaccgtttctttttttatctcttcattgtatctatcgttcttgtgctcaggatatgacttccatattgatggttgatttctccctcatagcaagca |
49264864 |
T |
|
| Q |
302 |
ctttccattaacatttcaacaaaggatc |
329 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
49264863 |
ctttccattaacatttcaacaaaggatc |
49264836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 12 - 122
Target Start/End: Original strand, 49263796 - 49263912
Alignment:
| Q |
12 |
ttgagaaattcttgtgtgcaaacaaacataacacatcatcctatacaaacaaccaatcagaaatttttgtttaataaa------attaaaattaaataat |
105 |
Q |
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||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
49263796 |
ttgagaaattcatgtgtgcaaacaaacataacacgtcatcctatacaaacaaccaatcagaaatttttatttaataaaattaaaattaaaattaaataat |
49263895 |
T |
|
| Q |
106 |
agacacgttctttcctc |
122 |
Q |
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||||||||||| ||||| |
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| T |
49263896 |
agacacgttctatcctc |
49263912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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