View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9381_low_30 (Length: 334)

Name: NF9381_low_30
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9381_low_30
NF9381_low_30
[»] chr5 (2 HSPs)
chr5 (186-296)||(7427599-7427709)
chr5 (66-157)||(7427723-7427814)
[»] chr7 (4 HSPs)
chr7 (186-296)||(4168477-4168587)
chr7 (186-295)||(38407072-38407181)
chr7 (66-157)||(4168612-4168703)
chr7 (66-157)||(38407210-38407301)
[»] chr2 (2 HSPs)
chr2 (192-296)||(7982683-7982787)
chr2 (66-157)||(7982575-7982666)
[»] chr8 (4 HSPs)
chr8 (186-296)||(41521695-41521805)
chr8 (66-157)||(41521579-41521670)
chr8 (66-157)||(7487145-7487236)
chr8 (74-157)||(118786-118869)
[»] chr1 (1 HSPs)
chr1 (70-134)||(47560397-47560461)


Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 186 - 296
Target Start/End: Complemental strand, 7427709 - 7427599
Alignment:
Q  186 ctcaaaatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattaga 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7427709 ctcaaaatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaagataggagaaattaga 7427610  T
Q  286 aagcaaaactc 296  Q
    |||||||||||    
T  7427609 aagcaaaactc 7427599  T

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Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 7427814 - 7427723
Alignment:
Q  66 aacattgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaaccttttcataaccataatcacctagatctcaattt 157  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7427814 aacattgtacatataaaactcaaaaaatttcttcatcacaattagcaacaacatcaaccttttcataaccataatcacctagatctcaattt 7427723  T

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Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 186 - 296
Target Start/End: Complemental strand, 4168587 - 4168477
Alignment:
Q  186 ctcaaaatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattaga 285  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4168587 ctcaacatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattaga 4168488  T
Q  286 aagcaaaactc 296  Q
    || ||||||||    
T  4168487 aatcaaaactc 4168477  T

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Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 186 - 295
Target Start/End: Complemental strand, 38407181 - 38407072
Alignment:
Q  186 ctcaaaatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattaga 285  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||    
T  38407181 ctcaacatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataacaacccaaagttgtatttttgtaaggtaagagaaattaga 38407082  T
Q  286 aagcaaaact 295  Q
    ||||||||||    
T  38407081 aagcaaaact 38407072  T

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Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 4168703 - 4168612
Alignment:
Q  66 aacattgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaaccttttcataaccataatcacctagatctcaattt 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4168703 aacattgttcatataaaacccagaaaatttcttcatcacaattagcaacaacatcaaccttttcataactataatcacctagatctcaattt 4168612  T

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Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 38407301 - 38407210
Alignment:
Q  66 aacattgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaaccttttcataaccataatcacctagatctcaattt 157  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||    
T  38407301 aacattgttcatataaaacccataaaatttcttcatcacaattagcaacaacatcaaccttttcataaccataatcaccctaatctcaattt 38407210  T

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Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 192 - 296
Target Start/End: Original strand, 7982683 - 7982787
Alignment:
Q  192 atcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattagaaagcaa 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  7982683 atcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattagaaatcaa 7982782  T
Q  292 aactc 296  Q
    |||||    
T  7982783 aactc 7982787  T

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Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 66 - 157
Target Start/End: Original strand, 7982575 - 7982666
Alignment:
Q  66 aacattgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaaccttttcataaccataatcacctagatctcaattt 157  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7982575 aacattgttcatataaaacccaaaaaaattcttcatcacaattagcaacaacatcaaccttttcataaccataatcacctagatctcaattt 7982666  T

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Target: chr8 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 186 - 296
Target Start/End: Original strand, 41521695 - 41521805
Alignment:
Q  186 ctcaaaatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataacccaaagttgtattcttgtaaggtaggagaaattaga 285  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41521695 ctcaacatcataatcttcatcaatcactttcttatcttccatattcatcaataacaataataactcaaagttgtattcttgtaaggtaggagaaattaga 41521794  T
Q  286 aagcaaaactc 296  Q
    || ||||||||    
T  41521795 aatcaaaactc 41521805  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 66 - 157
Target Start/End: Original strand, 41521579 - 41521670
Alignment:
Q  66 aacattgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaaccttttcataaccataatcacctagatctcaattt 157  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41521579 aacattgttcatataaaacccagaaaatttcttcatcacaattagcaacaacatcaaccttttcataaccataatcacctagatctcaattt 41521670  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 7487236 - 7487145
Alignment:
Q  66 aacattgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaaccttttcataaccataatcacctagatctcaattt 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||   ||||||||||    
T  7487236 aacattgttcatataaaacccaaaaaatttcttcatcacaattagaaacaacatcaaccttttcataaccataaacaccccaatctcaattt 7487145  T

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Target: chr8; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 157
Target Start/End: Complemental strand, 118869 - 118786
Alignment:
Q  74 tcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaaccttttcataaccataatcacctagatctcaattt 157  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||    
T  118869 tcatataaaatccagaaaatttcttcatcacaattagcaacaacatcaaccttttcataaccataaacaccccaatctcaattt 118786  T

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Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 47560397 - 47560461
Alignment:
Q  70 ttgttcatataaaacccaaaaaatttcttcatcacaattagcaacaacatcaaccttttcataac 134  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  47560397 ttgttcatataaaacccatgaaatttcttcatcacaattagcaacaacatcaaccttttcataac 47560461  T

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