View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_31 (Length: 328)
Name: NF9381_low_31
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 2899487 - 2899788
Alignment:
| Q |
17 |
cacctccatcattcaaggaatcgcgatgcatctcagttcttaaaaatagtgtcatggtcactgttgccatgagagtaagctaaaaacataggaagaatat |
116 |
Q |
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| T |
2899487 |
cacctccatcattcaatgaatcgcgatgcatctcagttcttaaaaatagtgtcatggtcactgttgccatgagagtaagctaaaaacataggaagaatat |
2899586 |
T |
|
| Q |
117 |
tnnnnnnnnnngttaaaagcatgtatgcaaaatattcatacaattaaatatagtattgaaaatgagaaaatatttatacatgtaaagcaaccagaactat |
216 |
Q |
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| T |
2899587 |
taaaaaaaaa-gttaaaagcatgtatgcaaaatattcatacaattaaatatagtattgaaaatgaaaaaatatttatacatgtaaagcaaccagaactat |
2899685 |
T |
|
| Q |
217 |
aatttacctgacatatcttgaagatgtaaacaaaggaattccttttcataagcaaatattctcttgagaagttagcctttaacagttctttcttgttaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2899686 |
aatttacctgacatatcttgaagatgtaaacaaaggaattccttttcataagcaaatattctcttgagaagttagcctttaacagttctttcttgttaac |
2899785 |
T |
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| Q |
317 |
acc |
319 |
Q |
| |
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||| |
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| T |
2899786 |
acc |
2899788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 2884874 - 2884772
Alignment:
| Q |
217 |
aatttacctgacatatcttgaagatgtaaacaaaggaattccttttcataagcaaatattctcttgagaagttagcctttaacagttctttcttgttaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2884874 |
aatttacctgacatatcttgaagatgtaaacaaaggaatttcttttcataagcaaatactctcttgagaagttagcctttaacagttctttcttgttaac |
2884775 |
T |
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| Q |
317 |
acc |
319 |
Q |
| |
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||| |
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| T |
2884774 |
acc |
2884772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 2885044 - 2884945
Alignment:
| Q |
17 |
cacctccatcattcaaggaatcgcgatgcatctcagttcttaaaaatagtgtcatggtcactgttgccatgagagtaagct-aaaaacataggaagaata |
115 |
Q |
| |
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|||||||| ||||||||||||| || ||||||||||||||||||||||||||||| | | |||||||||||| ||||| |||||||||||||||||| |
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| T |
2885044 |
cacctccaccattcaaggaatcacggtgcatctcagttcttaaaaatagtgtcattgcaattgttgccatgaggagaagctaaaaaacataggaagaata |
2884945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 2874992 - 2874903
Alignment:
| Q |
231 |
atcttgaagatgtaaacaaaggaattccttttcataagcaaatattctcttgagaagttagcctttaacagttctttcttgttaacacca |
320 |
Q |
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| T |
2874992 |
atcttaaagaggtaaatgaatgaatttcttttcataagcaaaaactctcttgagatgttagcctttaatagttccttcttgttaacacca |
2874903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 44212911 - 44212976
Alignment:
| Q |
233 |
cttgaagatgtaaacaaaggaattccttttcataagcaaatattctcttgagaagttagcctttaa |
298 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
44212911 |
cttgaagatgtaaacaaacgaattccttttcatgagcaaatactctcttgagaagttagcctttaa |
44212976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 44225072 - 44225137
Alignment:
| Q |
233 |
cttgaagatgtaaacaaaggaattccttttcataagcaaatattctcttgagaagttagcctttaa |
298 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
44225072 |
cttgaagatgtaaacaaacgaattccttttcatgagcaaatactctcttgagaagttagcctttaa |
44225137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 44235886 - 44235951
Alignment:
| Q |
233 |
cttgaagatgtaaacaaaggaattccttttcataagcaaatattctcttgagaagttagcctttaa |
298 |
Q |
| |
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|||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
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| T |
44235886 |
cttgaagatgtaaacaaaggaatttcttttcatgagcaaatactctcttgagaagttagcctttaa |
44235951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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