View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_36 (Length: 312)
Name: NF9381_low_36
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_36 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 297
Target Start/End: Original strand, 35042280 - 35042566
Alignment:
| Q |
4 |
ggagcacagacatgggtcccaattttaacttggatgccaccaatttcatatttatgtgattggagcctaagaaatatagaggatcttgatctatctttgt |
103 |
Q |
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| T |
35042280 |
ggagcacaaacatgggtcccaattttaacttgggtgccaccaatttcatatttatgtgattggagcctaagaaatatagaggatcttgatctatcattct |
35042379 |
T |
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| Q |
104 |
tcaaattataaaagtgtatattaattaaatagagagaattttgaccctgttagctaggacaggtgccatgccttgccaccattcatattgaatttcttga |
203 |
Q |
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| T |
35042380 |
tcaaat---aaaagtgtatattaa----atggagagaattttgaccctgttagctaggacaggtgccatgccttgccaccattcatattgaatttcttga |
35042472 |
T |
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| Q |
204 |
gtctaccaaagaacattaccaagataagaataagcttcccttctgtactccatctacctgaaaatccaatccatgaatctttgcacattaaatt |
297 |
Q |
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| T |
35042473 |
gtctcccaaagaacattaccaagataagaataagcttcccttctgtactccatctacctgaaaatccaatccatgaatctctgcacattaaatt |
35042566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 156 - 296
Target Start/End: Original strand, 34988863 - 34989003
Alignment:
| Q |
156 |
gctaggacaggtgccatgccttgccaccattcatattgaatttcttgagtctaccaaagaacattaccaagataagaataagcttcccttctgtactcca |
255 |
Q |
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| T |
34988863 |
gctaggacaagttccatgctttgccaccattcatattgaatttcttgagcatcccaaagaacattaccaaaataaggataaacttcccttttgcactcca |
34988962 |
T |
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| Q |
256 |
tctacctgaaaatccaatccatgaatctttgcacattaaat |
296 |
Q |
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| T |
34988963 |
cctaccagaaaatccaatccatgaatctttgcacattaaat |
34989003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 158 - 292
Target Start/End: Complemental strand, 15560236 - 15560102
Alignment:
| Q |
158 |
taggacaggtgccatgccttgccaccattcatattgaatttcttgagtctaccaaagaacattaccaagataagaataagcttcccttctgtactccatc |
257 |
Q |
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|||||||||||||| || ||||| || |||||||||||| ||||||| |||||||||||||| ||||| ||||| ||| |||||| ||||||||||| |
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| T |
15560236 |
taggacaggtgccaggctttgcctcctttcatattgaatctcttgagcctaccaaagaacataaccaatataaggatacacttcccctctgtactccact |
15560137 |
T |
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| Q |
258 |
tacctgaaaatccaatccatgaatctttgcacatt |
292 |
Q |
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| T |
15560136 |
ttcccgaaaatccaatccatgaatctttgcacatt |
15560102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 158 - 288
Target Start/End: Original strand, 15559699 - 15559829
Alignment:
| Q |
158 |
taggacaggtgccatgccttgccaccattcatattgaatttcttgagtctaccaaagaacattaccaagataagaataagcttcccttctgtactccatc |
257 |
Q |
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| T |
15559699 |
taggacaggtgccaggctttgcctcctttcatattgaatctcttgagcctcccaaagaacataaccaatataaggatacacttcccctctgtactccact |
15559798 |
T |
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| Q |
258 |
tacctgaaaatccaatccatgaatctttgca |
288 |
Q |
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| T |
15559799 |
ttcccgaaaatccaatccatgaatctttgca |
15559829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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