View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_37 (Length: 311)
Name: NF9381_low_37
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 47889853 - 47889604
Alignment:
| Q |
18 |
aatctcaccttccaattctctccgtcgtcgacctcccctctctcctccaagctgtcgctgtcgacactcttgtttccgccgctcaatctctcgctctcgt |
117 |
Q |
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| T |
47889853 |
aatctcaccttccaattctctccgtcgtcgacctcccctctctcctccaagctgtcgccatcgacactcttgtttccgccgctcaatctctcgctctcgt |
47889754 |
T |
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| Q |
118 |
atttctcatttccccctttaattacaatcttttaattttactttgcattttatccagtttactctgtaagcatgttgtggaaattagggtttctgctttg |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
47889753 |
atttctcattttcccctttaattacaatcttttaattttactttgcattttatccagtttactctgtaagcatgttgtgggaattaggttttctgctttg |
47889654 |
T |
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| Q |
218 |
aactctgtgccttgttagacgataccactcgatggttccgtttgttagca |
267 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47889653 |
aactctgtgccttgttagatgataccactcgatggttccgtttgttagca |
47889604 |
T |
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