View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_39 (Length: 305)
Name: NF9381_low_39
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 34593524 - 34593238
Alignment:
| Q |
1 |
acagaattcatgaattactagaaagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatctaattttccttctgttattgca |
100 |
Q |
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| T |
34593524 |
acagaattcatgaattactagaaagacaaaagcattgctttcttctatatgtcaatacgatataacactcaaaaaatcaaattttccttctgttattgca |
34593425 |
T |
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| Q |
101 |
gataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattttcttgttttttgatcccatgatttcatacactatccnnnnnn |
200 |
Q |
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| T |
34593424 |
gacaaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaactttcttgt-ttttgatcccttgatttcatacactatcctttttt |
34593326 |
T |
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| Q |
201 |
nnnaataaaatttttgaggtaggcgttagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgattcctcttgat |
288 |
Q |
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| T |
34593325 |
tttaataaaatttttgaggtaggcggtagaggatggaagttctccgaggtgccagcaaccagttgagatgtcggtgtttcctcttgat |
34593238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 34577665 - 34577609
Alignment:
| Q |
97 |
tgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
153 |
Q |
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| T |
34577665 |
tgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
34577609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 32589905 - 32589846
Alignment:
| Q |
94 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
153 |
Q |
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| T |
32589905 |
tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
32589846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 32600353 - 32600294
Alignment:
| Q |
94 |
tattgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggt |
153 |
Q |
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| T |
32600353 |
tattgcagataaacttggagttcagggaaagaaagtaaaaagcaacaatgatttagaggt |
32600294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 24884037 - 24884099
Alignment:
| Q |
96 |
ttgcagataaactaggagttcaaggaaagaaagtgaaaagtactaatgatttggaggtaattt |
158 |
Q |
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| T |
24884037 |
ttgcagacaaattaggaattcaagggaagaaggtgaaaagtaatgatgatttggaggtgattt |
24884099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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