View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_40 (Length: 301)
Name: NF9381_low_40
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 32853889 - 32854181
Alignment:
| Q |
1 |
tggaaggatgtccacgaaatgagtcccgtcttccttcttgtcgcgagttggaactctggatattcatctttgcttgaaaaacattctccaatggctgatt |
100 |
Q |
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| T |
32853889 |
tggaaggatgtccacgaaatgagtccccacttccttcttgtcgcgagttggaactccggatattcatctttgcttgaaaaacattctccaatggctgatt |
32853988 |
T |
|
| Q |
101 |
gttgtatctattcactctttcctcatgagcttctaaggaacccatcaattcatattgtgagagttttgtgaggtcctttgtttcttcaataacagcaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853989 |
gttgtatctattcactctttcctcatgagcttctaaggaacccatcagttcatattgtgagagttttgtgaggtcctttgtttcttcaataacagcaaca |
32854088 |
T |
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| Q |
201 |
acatgttcaaatttttgtggaaggcttctcaatattttctcaaccactttcctttctggaacttgttctccacaacttttaatttgatgtcca |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32854089 |
acatgttcaaatttttgtggaaggcttctcaatattttctcaaccactttcctttctggaacttgttctccacaacttttaatttgatttcca |
32854181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 37177024 - 37177316
Alignment:
| Q |
1 |
tggaaggatgtccacgaaatgagtcccgtcttccttcttgtcgcgagttggaactctggatattcatctttgcttgaaaaacattctccaatggctgatt |
100 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37177024 |
tggaaggatgtccacgaaatgagtccccacttccttcttgtcgcgagttggaactccggatattcatctttgcttgaaaaacattctccaatggctgatt |
37177123 |
T |
|
| Q |
101 |
gttgtatctattcactctttcctcatgagcttctaaggaacccatcaattcatattgtgagagttttgtgaggtcctttgtttcttcaataacagcaaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37177124 |
gttgtatctattcactctttcctcatgagcttctaaggaacccatcaatttatattgtgagagttttgtgaggtcctttgtttcttcaataacagcaaca |
37177223 |
T |
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| Q |
201 |
acatgttcaaatttttgtggaaggcttctcaatattttctcaaccactttcctttctggaacttgttctccacaacttttaatttgatgtcca |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
37177224 |
acatgttcaaatttttgtggaaggcttctcaatattttctcaaccactttcttttctggaacttgttctccacaacttttaatttgatttcca |
37177316 |
T |
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