View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_44 (Length: 269)
Name: NF9381_low_44
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_44 |
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Alignment Details
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 36706641 - 36706730
Alignment:
| Q |
15 |
aatttggactaataaaattttcactcccacccaaggttaccattttttgccagattaacaaaacaacaacaaagaaagtaaagagaaaactgc |
107 |
Q |
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| T |
36706641 |
aatttggactaataaaattttcactcccacccaaggttaccattttttgccagattaataa---aacaacaaagaaagtaaagagaaaactgc |
36706730 |
T |
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Target: chr2; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 200 - 253
Target Start/End: Original strand, 36706830 - 36706883
Alignment:
| Q |
200 |
gagtttaattttgataatgttagcatgaatcactcttaacacttacttagaatt |
253 |
Q |
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| T |
36706830 |
gagtttaattttgataatgttagcatgaatcactcttaacacttacttagaatt |
36706883 |
T |
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