View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_59 (Length: 243)
Name: NF9381_low_59
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 44225307 - 44225095
Alignment:
| Q |
12 |
gcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtacc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225307 |
gcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcgtttcaatccttccatattggtaggaaacttgctgaggagctttccgtacc |
44225208 |
T |
|
| Q |
112 |
atttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44225207 |
atttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttg |
44225108 |
T |
|
| Q |
212 |
ctcatgaaaagga |
224 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44225107 |
ctcatgaaaagga |
44225095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 44236121 - 44235911
Alignment:
| Q |
12 |
gcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtacc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44236121 |
gcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcgtttcaatccttccatattggtaggaaacttgctgaggagctttccgtacc |
44236022 |
T |
|
| Q |
112 |
atttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44236021 |
atttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttg |
44235922 |
T |
|
| Q |
212 |
ctcatgaaaag |
222 |
Q |
| |
|
||||||||||| |
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|
| T |
44235921 |
ctcatgaaaag |
44235911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 44213146 - 44212934
Alignment:
| Q |
12 |
gcagagatcaaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtacc |
111 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||| || |||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
44213146 |
gcagagatcaaccataccgatatgtaactgttactcaatttgccgaggcatttcaatcattccatattggtgggaaacttgctgaggagctttccatacc |
44213047 |
T |
|
| Q |
112 |
atttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44213046 |
atttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttg |
44212947 |
T |
|
| Q |
212 |
ctcatgaaaagga |
224 |
Q |
| |
|
||||||||||||| |
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|
| T |
44212946 |
ctcatgaaaagga |
44212934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 222
Target Start/End: Original strand, 2884632 - 2884833
Alignment:
| Q |
21 |
aaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtaccatttgacaa |
120 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||| | |||| |||| |||||| | || |||||| | | ||||||||||| |
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|
| T |
2884632 |
aaccatacaggtttgtaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaggagatgagcttgcaattccatttgacaa |
2884731 |
T |
|
| Q |
121 |
gacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaa |
220 |
Q |
| |
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| | |||| |||||||| || || || || ||| |||| ||| | ||||||| || || |||||||||||||||||||||||||||||||| |||||| |
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|
| T |
2884732 |
gtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagagtatttgcttatgaaa |
2884831 |
T |
|
| Q |
221 |
ag |
222 |
Q |
| |
|
|| |
|
|
| T |
2884832 |
ag |
2884833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 2899928 - 2899725
Alignment:
| Q |
21 |
aaccatacagatttgtaactgttactcaattcgctgaggcatttcaatccttccatattggtaggaaacttgctgaggagctttccgtaccatttgacaa |
120 |
Q |
| |
|
|||||||||| ||| |||||||||||||||| ||||||||||||||||| | |||| |||| |||||| || |||||| | | ||||||||||| |
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|
| T |
2899928 |
aaccatacaggtttttaactgttactcaatttgctgaggcatttcaatcataccatgttggaaggaaaacaagagatgagcttgcaattccatttgacaa |
2899829 |
T |
|
| Q |
121 |
gacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatttgctcatgaaa |
220 |
Q |
| |
|
| | |||| |||||||| || || || || ||| |||| ||| | ||||||| || || ||||||||||||||||||||||| |||||||| |||||| |
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|
| T |
2899828 |
gtctaagaatcatccagcagcattaacaactaaaaagtacggtgttaacaagaaagaactgttaaaggctaacttctcaagagaatatttgcttatgaaa |
2899729 |
T |
|
| Q |
221 |
agga |
224 |
Q |
| |
|
|||| |
|
|
| T |
2899728 |
agga |
2899725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 2874853 - 2874965
Alignment:
| Q |
110 |
ccatttgacaagacgaagagccatccagctgctttgaccaccaaagagtatggtctcaacaagacggagcttttaaaggctaacttctcaagagagtatt |
209 |
Q |
| |
|
|||||||||||| | || | |||||||| || || || || ||| |||||||| | ||||||| ||| || |||||||||||| |||||||||||| || |
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|
| T |
2874853 |
ccatttgacaagtcaaataatcatccagcagcattaacaactaaaaagtatggtgttaacaagaaggaactattaaaggctaacatctcaagagagtttt |
2874952 |
T |
|
| Q |
210 |
tgctcatgaaaag |
222 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
2874953 |
tgcttatgaaaag |
2874965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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