View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_61 (Length: 242)
Name: NF9381_low_61
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 2 - 225
Target Start/End: Original strand, 47212224 - 47212441
Alignment:
| Q |
2 |
atataagcttattataaagttatagtcattactccttttgattgatgttatttaaatatggtgatnnnnnnnnnnnnnnnncagatttttcagcaattca |
101 |
Q |
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| T |
47212224 |
atataagcttattataaagttatagtcattactccttttgattgatgttatttaaatatggtgataaaaaaaaaa------cagatttttcagcaattca |
47212317 |
T |
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| Q |
102 |
ctggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggattcaagaatgatgctgcactttactctgctgtgattactggtgcaat |
201 |
Q |
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| T |
47212318 |
ctggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggatttaagaatgatgctgcactttactctgctgtgattactggtgcaat |
47212417 |
T |
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| Q |
202 |
caatgttatctcaactatagtttc |
225 |
Q |
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|||||| ||||||||||||||||| |
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| T |
47212418 |
caatgtcatctcaactatagtttc |
47212441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 47185683 - 47185768
Alignment:
| Q |
95 |
caattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggattcaagaatgatgctgcactttactc |
180 |
Q |
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| T |
47185683 |
caattcaccggcatcaatgcaatcatgttctatgctccagtattgttcaacactttgggatttcacaatgatgcttcactttactc |
47185768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 47198219 - 47198307
Alignment:
| Q |
92 |
cagcaattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggattcaagaatgatgctgcactttactc |
180 |
Q |
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| T |
47198219 |
cagcaatgcaccggcatcaatgcaatcatgttctatgctccagtattgttcagcactctgggatttcacaatgatgcttcactttactc |
47198307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 95 - 199
Target Start/End: Complemental strand, 748980 - 748876
Alignment:
| Q |
95 |
caattcactggcatcaatgcgataatgttctatgctccagttctgttcaacaccttaggattcaagaatgatgctgcactttactctgctgtgattactg |
194 |
Q |
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|||||||| |||||||| ||||| ||||| ||||| |||||| ||||||| || | |||||||||||||||||| | || || || ||||||||||||| |
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| T |
748980 |
caattcacaggcatcaacgcgatcatgttttatgcaccagttttgttcaatacagtgggattcaagaatgatgcttccctctattcagctgtgattactg |
748881 |
T |
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| Q |
195 |
gtgca |
199 |
Q |
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||||| |
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| T |
748880 |
gtgca |
748876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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