View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_67 (Length: 231)
Name: NF9381_low_67
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_67 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 13848174 - 13848393
Alignment:
| Q |
2 |
agagacaattgtaagtgaaaagtttgaatccacatatcgaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgaaagta |
101 |
Q |
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| T |
13848174 |
agagacaattgtaagggaaaagtttgaatcctcacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgacagta |
13848273 |
T |
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| Q |
102 |
gaagatggaggaattgagtgttttaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttcttgaggttcactcatggt |
201 |
Q |
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| T |
13848274 |
gaagatggaggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttgttgaggttcactcatggt |
13848373 |
T |
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| Q |
202 |
ccctttaatttgatgtccat |
221 |
Q |
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| T |
13848374 |
ccctttaatttgaggtccat |
13848393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 34343782 - 34343982
Alignment:
| Q |
11 |
tgtaagtgaaaagtttgaatccacatatcgaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgaaagtagaagatgga |
110 |
Q |
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| T |
34343782 |
tgtaagtgaaaagtttgaatcctcacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgacagtagaagatgga |
34343881 |
T |
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| Q |
111 |
ggaattgagtgttttaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttcttgaggttcactcatggtccctttaat |
210 |
Q |
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| T |
34343882 |
ggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgact---tagtgtaggtcatttgttgaggttcactcatggtccctttaat |
34343978 |
T |
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| Q |
211 |
ttga |
214 |
Q |
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|||| |
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| T |
34343979 |
ttga |
34343982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 212
Target Start/End: Original strand, 34823081 - 34823153
Alignment:
| Q |
139 |
gttttgttttcccaaaaaatatgactggctagtgtaggtcatttcttgaggttcactcatggtccctttaattt |
212 |
Q |
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| T |
34823081 |
gtttttttttcctaaaagatatgaccggctagagcaggtcatttgttgaggttcactcatgat-cctttaattt |
34823153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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