View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9381_low_68 (Length: 228)
Name: NF9381_low_68
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_68 |
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| [»] chr7 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 34500429 - 34500647
Alignment:
| Q |
11 |
tattaagaataggcagacaattaacgggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattt |
108 |
Q |
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|||||||||||| || |||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
34500429 |
tattaagaatagcaag-caattagctggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaattt |
34500527 |
T |
|
| Q |
109 |
ttataaccaataatgagcttttactattcccggtatgaaaggcacgaaccgggtcgcatggttaaaaacgggttacatggctgaaatgggttgaaaacac |
208 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
34500528 |
ttataaccaataatgagcttttattattcccggtaagaaaggcacgaaccgggtcgcatgggtaaaaacgggtcacatggctgaaatgggttgaaaacac |
34500627 |
T |
|
| Q |
209 |
agtcgttttgctctcttttc |
228 |
Q |
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|||||||||||||||||||| |
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| T |
34500628 |
agtcgttttgctctcttttc |
34500647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 36828547 - 36828662
Alignment:
| Q |
11 |
tattaagaataggcagacaattaacgggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattt |
108 |
Q |
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|||||||||||| || |||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
36828547 |
tattaagaatagcaag-caattagctggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaattt |
36828645 |
T |
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| Q |
109 |
ttataaccaataatgag |
125 |
Q |
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||||||||||||||||| |
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| T |
36828646 |
ttataaccaataatgag |
36828662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 125
Target Start/End: Complemental strand, 37617313 - 37617198
Alignment:
| Q |
11 |
tattaagaataggcagacaattaacgggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattt |
108 |
Q |
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|||||||||||| ||| ||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
37617313 |
tattaagaatagcaaga-aattagctggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaattt |
37617215 |
T |
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| Q |
109 |
ttataaccaataatgag |
125 |
Q |
| |
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||||||||||||||||| |
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| T |
37617214 |
ttataaccaataatgag |
37617198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 37 - 228
Target Start/End: Original strand, 44429180 - 44429373
Alignment:
| Q |
37 |
ggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgagcttttacta |
134 |
Q |
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||||||||||||||||| |||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || |
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| T |
44429180 |
ggcacattcattgtatgacttttcagcaagcaatatggatcaacgaaatcataaataagcatttattttaatttttataaccaataatgagcttctatta |
44429279 |
T |
|
| Q |
135 |
ttcccggtatgaaaggcacgaaccgggtcgcatggttaaaaacgggttacatggctgaaatgggttgaaaacacagtcgttttgctctcttttc |
228 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
44429280 |
ttcccggtatgaaaggcacgaaccgggttgcatgggtaaaaacgggtcacacggctgaaatgggttgaaaacacagtcgttatgctctcttttc |
44429373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 11 - 125
Target Start/End: Original strand, 44421023 - 44421138
Alignment:
| Q |
11 |
tattaagaataggcagacaattaacgggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattt |
108 |
Q |
| |
|
|||||||||||| || |||||| | ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
44421023 |
tattaagaatagcaag-caattagctggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaattt |
44421121 |
T |
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| Q |
109 |
ttataaccaataatgag |
125 |
Q |
| |
|
||||||||||||||||| |
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| T |
44421122 |
ttataaccaataatgag |
44421138 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 39 - 177
Target Start/End: Original strand, 3170806 - 3170946
Alignment:
| Q |
39 |
cacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgagcttttactatt |
136 |
Q |
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||||||||||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
3170806 |
cacattcattgtatgacttttcagcaagcaatatgggtcaaagaaatcataaataagcatttactttaatttttataaccaataatgagcttttattatt |
3170905 |
T |
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| Q |
137 |
cccggtatgaaaggcacgaaccgggtcgcatggttaaaaac |
177 |
Q |
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||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
3170906 |
cccggtatgaaagtcacgaaccgggtcgcatgggtaaaaac |
3170946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 8114204 - 8114114
Alignment:
| Q |
37 |
ggcacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgag |
125 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
8114204 |
ggcacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaatttttataaccaataatgag |
8114114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 3182828 - 3182884
Alignment:
| Q |
172 |
aaaaacgggttacatggctgaaatgggttgaaaacacagtcgttttgctctcttttc |
228 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
3182828 |
aaaaacgggtcacatggctgaaatgggttgaaaacacaatcgttttgctctcttttc |
3182884 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 125
Target Start/End: Complemental strand, 83398 - 83310
Alignment:
| Q |
39 |
cacattcattgtatggcttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgag |
125 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
83398 |
cacattcattgtatgacttttcagcaagcaatatgggtcaacgaaatcataaataagcatttattttaatttttataaccaataatgag |
83310 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 8149036 - 8148961
Alignment:
| Q |
31 |
ttaacgggcacattcattgtatggcttttcagcaagcaatgggtcaacgaaatcataaatatgcatttattttaattt |
108 |
Q |
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||||| |||||||||||||| || ||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
8149036 |
ttaactggcacattcattgtgtgacttttcagcaagcaatg--tcaaagaaatcataaatatgcatttattttaattt |
8148961 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 8153660 - 8153585
Alignment:
| Q |
31 |
ttaacgggcacattcattgtatggcttttcagcaagcaatgggtcaacgaaatcataaatatgcatttattttaattt |
108 |
Q |
| |
|
||||| |||||||||||||| || ||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
8153660 |
ttaactggcacattcattgtgtgacttttcagcaagcaatg--tcaaagaaatcataaatatgcatttattttaattt |
8153585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 37 - 164
Target Start/End: Complemental strand, 24835980 - 24835855
Alignment:
| Q |
37 |
ggcacattcattgtatggcttttcagcaagca-atgggtcaacgaaatcataaatatgcatttattttaatttttataaccaataatgagcttttactat |
135 |
Q |
| |
|
||||||||||||| || | ||||||||||| ||||||||||||||||||||||| |||||| |||| |||||| ||||||||| ||||||||| ||| |
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| T |
24835980 |
ggcacattcattgcgtgagtattcagcaagcatatgggtcaacgaaatcataaataagcatttttttt--tttttaaaaccaataacgagcttttattat |
24835883 |
T |
|
| Q |
136 |
tcccggtatgaaaggcacgaaccgggtcg |
164 |
Q |
| |
|
||| ||| || ||||||||||||||| |
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| T |
24835882 |
ccccataatg-aatgcacgaaccgggtcg |
24835855 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 28171652 - 28171595
Alignment:
| Q |
55 |
cttttcagcaagcaat--gggtcaacgaaatcataaatatgcatttattttaattttt |
110 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| | ||||||||| ||||| |
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|
| T |
28171652 |
cttttcagcaagcaatatgggtcaacgaaatcataaataagattttattttatttttt |
28171595 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 2993869 - 2993942
Alignment:
| Q |
28 |
caattaacgggcacattcattgtatggcttttcagcaagca--atgggtcaacgaaatcataaatatgcattta |
99 |
Q |
| |
|
|||||| | ||||||||| |||| || |||||||||||||| |||| |||| |||||||||||||| |||||| |
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| T |
2993869 |
caattagctggcacattcgttgtgtgacttttcagcaagcaatatggatcaaagaaatcataaatatacattta |
2993942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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