View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_7 (Length: 487)
Name: NF9381_low_7
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 14 - 474
Target Start/End: Original strand, 34435943 - 34436402
Alignment:
| Q |
14 |
aggcattctgagaatctaatattaacttgatgcatatcatgtttggaagaggaaattctgaaaattaactgtttctctggggattaccaggtttttctac |
113 |
Q |
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| T |
34435943 |
aggcattctgagaatctaatattaacttgatgcatatcatgtttgaaagaggaaattctgaaaattacctgtttctctggggattaccaggtttttctac |
34436042 |
T |
|
| Q |
114 |
agagcaattcacatgctcgctttacaccaagagctgttgcgagggtaatgcatggaattgcaagcccagcctacccttatacagtatggggtaaaaccca |
213 |
Q |
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| T |
34436043 |
agagcaattcacatgctcgctttacaccaagagctgttgcgagggtaatgcatggaattgcaagcccagcctacccttatacaatatggggtaaaaccca |
34436142 |
T |
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| Q |
214 |
tttctggtacgttgaaaaacttttgattccatgtccttaaatacttgttggtatcaaataaattgggtgacttttaggtaatatcattatcaataagtaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34436143 |
tttctggtacgttgaaaaacttttgattccatgtccttaaatacttgttggtatcaaataaattgggtgacttttaggtaatatcattatcaataagtaa |
34436242 |
T |
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| Q |
314 |
accgtacgtcaattatattaataagtaaaccttttccagattttctatttcataagttttagctttgatttgtgaaacaaaaggaagaaactctagtgag |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34436243 |
accgtacgtcaattatattaataagtaaaccttttccagattttctatttcataagttttagctttgatttgtgaaacaaaaggaagaaactctagtgag |
34436342 |
T |
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| Q |
414 |
caatgtccattcgtttcannnnnnncagtcctacttttgtttaacattgaatgtgtattat |
474 |
Q |
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| T |
34436343 |
caatgtccattcgtttca-ttttttcagtcctacttttgtttaacattgaatgtgtattat |
34436402 |
T |
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