View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9381_low_8 (Length: 475)
Name: NF9381_low_8
Description: NF9381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9381_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 47269062 - 47268693
Alignment:
| Q |
1 |
aagggcatctgtttgagcagtatttttctcaatttagtccgtcaaatatcttaataactaatcatggtcaacttcaaacatgatatatggtg---tctat |
97 |
Q |
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| T |
47269062 |
aagggcatctgtttgagcagtatttttctcaatttagtccgtcaaatatcttaataactaatcatggtcaacttcaaacatgatatatggtggtgtctat |
47268963 |
T |
|
| Q |
98 |
gtacatgttttctaggaaatgcatttgcattttctcagctagcagctgaaatgagatggtttagatttgtttgtatcgatattcatgacttgtatgtgtg |
197 |
Q |
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| T |
47268962 |
gtacatgttttctaggaaatgcatttgcattttctcagctagcagctgaaatgagatggtttagatttgtttgtatcgatattcatgacttgtatgtgtg |
47268863 |
T |
|
| Q |
198 |
tagtagaattgaattggttgaatttagttgctatttgctagaatttgatgaatcagatgatcgggtaagcaacttctttctcttttggattacctaaaaa |
297 |
Q |
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| T |
47268862 |
tagtagaattgaattggttgaatttagttgctatttgctagaatttgatgaatcagatgatcgggtaagtaacttctttctcttttggattacctaaaaa |
47268763 |
T |
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| Q |
298 |
gtaaacatggattgcactcgcaaattttaacctaaatagattagtagtttgagtgttatcaattttttca |
367 |
Q |
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| T |
47268762 |
gtaaacatggattgcactcgcaaattttaacctaaatagattagtagtttgagtgttatcaattttttca |
47268693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 389 - 458
Target Start/End: Complemental strand, 47268651 - 47268582
Alignment:
| Q |
389 |
tttagatcaagtttaattgccttgtaaatttcatatacgcacattgttaagcacacttacagttggtttg |
458 |
Q |
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| T |
47268651 |
tttagatcaagtttaattgccttgtaaatttcatatacgcacattgttaagcacacttacagttcgtttg |
47268582 |
T |
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