View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9382_low_3 (Length: 254)
Name: NF9382_low_3
Description: NF9382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9382_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 14 - 243
Target Start/End: Complemental strand, 1058614 - 1058389
Alignment:
| Q |
14 |
ggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccct |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1058614 |
ggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccct |
1058515 |
T |
|
| Q |
114 |
gcaatttgcacccccaatgagtatgttacagaattgtaaaatgtcctagtgccctctaaagcaacattgtattatgtatggtacattgaataatttttta |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||| |
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| T |
1058514 |
gcaatttgcacccccaatgagtatgttacagaattgtaaaatgtcctagtgccctctaaagcaaaattgtat----tatggtacattgaagaatttttta |
1058419 |
T |
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| Q |
214 |
attttggagatatttgtaaagattagtatt |
243 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
1058418 |
attttggagatatttgtaaagattagtatt |
1058389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 1065702 - 1065545
Alignment:
| Q |
18 |
ccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgcaa |
117 |
Q |
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||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| | |||||||| ||| ||||||||||||||||||||||| ||||||| |
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| T |
1065702 |
ccaccatattcatctgtcctgtcattcactttatctttcatgaattgctcaaggaggtagccatgagctccatggatttcaaccccatcaaatcctgcaa |
1065603 |
T |
|
| Q |
118 |
tttgcacccccaatgagtatgttacagaattgtaaaatgtcctagtgccctctaaagca |
176 |
Q |
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| T |
1065602 |
tttgc-gccctagtaagtatgttatataattgtaaaatgtcccagtgctctctaaagca |
1065545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 1071433 - 1071282
Alignment:
| Q |
14 |
ggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccct |
113 |
Q |
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|||||||||||| |||||||| ||||| ||||||| ||||||||||||||| ||||| | |||||||| ||| ||||||||||||||||||||||| ||| |
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| T |
1071433 |
ggatccaccatactcatctgtcctgtcattcactttatctttcatgaattgttcaaggaggtagccatgagctccatggatttcaaccccatcaaatcct |
1071334 |
T |
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| Q |
114 |
gcaatttgcacccccaatgagtatgttacagaattgtaaaatgtcctagtgcc |
166 |
Q |
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|||||||| | ||||| | |||||| |||| ||||| |||||||||||||||| |
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| T |
1071333 |
gcaatttgta-ccccactaagtatgatacataattggaaaatgtcctagtgcc |
1071282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 1044091 - 1043980
Alignment:
| Q |
14 |
ggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccct |
113 |
Q |
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|
||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||||||| |||||||| ||| |||||||||||||| |||||||| ||| |
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| T |
1044091 |
ggatccaccgtattcatctgttctgtcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatggatttcaactccatcaaaacct |
1043992 |
T |
|
| Q |
114 |
gcaatttgcacc |
125 |
Q |
| |
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||||||||||| |
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| T |
1043991 |
tcaatttgcacc |
1043980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 1053346 - 1053238
Alignment:
| Q |
17 |
tccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgca |
116 |
Q |
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|
||||||||||||||||||||||||||| ||| ||||||||||||||| |||| || |||||||| ||| ||||||||||||||||||||||| ||| || |
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| T |
1053346 |
tccaccatattcatctgttctgtcgtttgctttatctttcatgaattgttcaactaggtagccatgagctccatggatttcaaccccatcaaaacctaca |
1053247 |
T |
|
| Q |
117 |
atttgcacc |
125 |
Q |
| |
|
||||||||| |
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|
| T |
1053246 |
atttgcacc |
1053238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 123
Target Start/End: Complemental strand, 1033704 - 1033595
Alignment:
| Q |
14 |
ggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccct |
113 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| ||||||||||||||| ||||||| |||||||| ||| ||||| | |||||| |||||||| ||| |
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|
| T |
1033704 |
ggatccaccatattcatctgttctatcattcactttatctttcatgaattgttcaagtaggtagccatgagctccatgaagttcaacaccatcaaaacct |
1033605 |
T |
|
| Q |
114 |
gcaatttgca |
123 |
Q |
| |
|
|||||||||| |
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|
| T |
1033604 |
gcaatttgca |
1033595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 1046671 - 1046579
Alignment:
| Q |
17 |
tccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaa |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||| ||| |||||||| | ||||||||||||||||| |
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| T |
1046671 |
tccaccatattcatctgttctgtcattcactttatctttcatgaattgctcaagtaggtatccagtagccccacgaatttcaaccccatcaaa |
1046579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 1640855 - 1640960
Alignment:
| Q |
17 |
tccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccctgca |
116 |
Q |
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|||||| |||| ||| |||| ||| ||||||| ||||||||| ||||||||||||| ||| || | |||||||||||| ||||| |||||||| |||||| |
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| T |
1640855 |
tccaccgtatttatcagttcggtcattcactttatctttcataaattgctcaagtaggtaaccgtgagccccatggatctcaactccatcaaaacctgca |
1640954 |
T |
|
| Q |
117 |
atttgc |
122 |
Q |
| |
|
|||||| |
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|
| T |
1640955 |
atttgc |
1640960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 1071240 - 1071194
Alignment:
| Q |
195 |
tacattgaataattttttaattttggagatatttgtaaagattagta |
241 |
Q |
| |
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|||||| |||||||| |||||||| |||| ||||||||||||||||| |
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| T |
1071240 |
tacattaaataatttattaatttttgagacatttgtaaagattagta |
1071194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 44171343 - 44171452
Alignment:
| Q |
14 |
ggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccct |
113 |
Q |
| |
|
|||||||||||||||||||||| || | ||||||| ||| ||||||||||| ||||||| |||||||| ||| ||||| ||||| || |||||||| ||| |
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|
| T |
44171343 |
ggatccaccatattcatctgttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaacct |
44171442 |
T |
|
| Q |
114 |
gcaatttgca |
123 |
Q |
| |
|
|||||||||| |
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|
| T |
44171443 |
gcaatttgca |
44171452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 44191639 - 44191748
Alignment:
| Q |
14 |
ggatccaccatattcatctgttctgtcgttcacttgatctttcatgaattgctcaagtatgtagccattagccccatggatttcaaccccatcaaaccct |
113 |
Q |
| |
|
|||||||||||||||||||||| || | ||||||| ||| ||||||||||| ||||||| |||||||| ||| ||||| ||||| || |||||||| ||| |
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|
| T |
44191639 |
ggatccaccatattcatctgttttgccattcactttatccttcatgaattgttcaagtaggtagccatgagctccatgaatttccacaccatcaaaacct |
44191738 |
T |
|
| Q |
114 |
gcaatttgca |
123 |
Q |
| |
|
|||||||||| |
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|
| T |
44191739 |
gcaatttgca |
44191748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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