View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9383_high_1 (Length: 347)
Name: NF9383_high_1
Description: NF9383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9383_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 35336467 - 35336775
Alignment:
| Q |
1 |
gtagcattcccagatgtagacccttccttactttcagttcagcatgaacactctcgcccctatggcaagccattcttgagagcagttagcaaggaaataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35336467 |
gtagcattcccagatgtagacccttccttactttcagttcagcatgaacactctcgcccctatggcaagccattctcgagagcagttagcaaggaaataa |
35336566 |
T |
|
| Q |
101 |
ctgattcatttgatcgacctcacttatggtattcaacatctgaagtaatttatgcattggagctatttatatctagtggagacgaactttcaaaaagtag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
35336567 |
ctgattcatttgatcgacctcacttatggtattcaacatctgaagtaatttatgcattggagctatttatatctagtggaaacgaacttccaaaaagtag |
35336666 |
T |
|
| Q |
201 |
tacatataggtaagagaagttgattacttaagaattaccagtcctcattaagtacctcgatgttgtcttattgtatgttaaggttcaatatccagattct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35336667 |
tacatataggtaagagaagttgattacttaagaattaccagtcctcattaagtacctcaatgttgtcttattgtatgttaaggttcaatatccagattct |
35336766 |
T |
|
| Q |
301 |
tacttcttc |
309 |
Q |
| |
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||||||||| |
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| T |
35336767 |
tacttcttc |
35336775 |
T |
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