View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9383_low_1 (Length: 395)
Name: NF9383_low_1
Description: NF9383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9383_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 43364113 - 43363743
Alignment:
| Q |
18 |
agttcgaactttccaggtaggcttcatgggagagcctaatgagttgaggtcaggcagtggtgagtttcacgagaatccaacgtcttgcatatgtcaaaac |
117 |
Q |
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| T |
43364113 |
agttcgaactttccaggtaggcttcatgggagagcctaatgagttgaggtcaggcagtggtgagtttcacgagaatccaacgtcttgcatatgtcaaaac |
43364014 |
T |
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| Q |
118 |
tcagggtcggaggtaaaaaccgagggattttccaatcctcaaaatcaaacgcatgaaggcaataaggtagagaacaggacagaaaagaagcctgctgagg |
217 |
Q |
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| T |
43364013 |
tcagggtcggaggtaaaaaccgagggattttccaatcctcaaaatcaaacgcatgaaggcaataaggtagagaacaggacagaaaagaagcctgctgagg |
43363914 |
T |
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| Q |
218 |
aagaacgggagtggtctgaattagattatgatttggacaattatagaaagcaggttcagctcaaaggaactaatattgattcgctcccccttctaatggg |
317 |
Q |
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| T |
43363913 |
aagaacgggagtggtctgaattagattatgatttggacaattatagaaagcaggttcagctcaaaggaactaatattgattcgctcccccttctaatggg |
43363814 |
T |
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| Q |
318 |
tactgaccaagctgaagtgcaagtattcttctcagattagatgttcgaattctagcaacttctctctgctt |
388 |
Q |
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| T |
43363813 |
tactgaccaagctgaagtacaagtattcttctcagattagatgttcgaattctagcaacttctccctgctt |
43363743 |
T |
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