View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9383_low_10 (Length: 273)
Name: NF9383_low_10
Description: NF9383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9383_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 1502158 - 1501990
Alignment:
| Q |
1 |
taagctccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatcctgagtcaaaagattaggttcccctcc |
100 |
Q |
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| T |
1502158 |
taagctccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatcctgagtcaaaagattaggttcccctcc |
1502059 |
T |
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| Q |
101 |
aatagagaactttgtccttcgtatatcttgaatgtgttccttcggtgaacgtgtacccattcttgttct |
169 |
Q |
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| T |
1502058 |
aatagagaactttgtccttcgtatatcttgaatgtgttccttcggtgaacgtgtacccattcttgttct |
1501990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 1501952 - 1501868
Alignment:
| Q |
172 |
atacttggtgtgaaatgaaatgtgtgaagagaaaacaagaagaagagtgtactaatccctaatacgtgttggcttacttgaaatgt |
257 |
Q |
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| T |
1501952 |
atacttggtgtgaaatgaaatgtgtgaagagaaaacaagaagaagagtgtactaat-cctaatacgtgttggcttacttgaaatgt |
1501868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 139
Target Start/End: Original strand, 28029353 - 28029486
Alignment:
| Q |
6 |
tccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatcctgagtcaaaagattaggttcccctccaatag |
105 |
Q |
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| T |
28029353 |
tccatcaggaaatgaacatcttttgcataaagctcggcggagagattcttaacggcatgatgaagatcctcagtcaaaggattaggatttccaccaatag |
28029452 |
T |
|
| Q |
106 |
agaactttgtccttcgtatatcttgaatgtgttc |
139 |
Q |
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| T |
28029453 |
agaactttgtccttcgtatctcttcaacgtgttc |
28029486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 147
Target Start/End: Complemental strand, 3008182 - 3008041
Alignment:
| Q |
6 |
tccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatcctgagtcaaaagattaggttcccctccaatag |
105 |
Q |
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||||| ||||||||||||||||| || ||||| || || |||||||||||||| |||| ||| ||||| | |||||| ||||||||| ||| ||||||| |
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| T |
3008182 |
tccatgagaaaatgaacatctttggcgtaaagctcggcagagagattcttgactgcatgatggagatcataagtcaatggattaggtttcccaccaatag |
3008083 |
T |
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| Q |
106 |
agaactttgtccttcgtatatcttgaatgtgttccttcggtg |
147 |
Q |
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| T |
3008082 |
aaaacttttctcttcgtatctcttcaatgtgttctttcggtg |
3008041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 37800105 - 37800222
Alignment:
| Q |
3 |
agctccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatcctgagtcaaaagattaggttcccctccaa |
102 |
Q |
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|||||||| || ||||| ||||| ||||||||||| ||||| ||||||||||| ||||| | ||| ||||||| ||||||| ||||||| | ||| |||| |
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| T |
37800105 |
agctccattaggaaatggacatcctttgcataaagctcagcagagagattcttaacagcgtgatgtagatcctcagtcaaaggattaggattcccaccaa |
37800204 |
T |
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| Q |
103 |
tagagaactttgtccttc |
120 |
Q |
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| T |
37800205 |
tagagaattttgtccttc |
37800222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 2935320 - 2935455
Alignment:
| Q |
3 |
agctccataagaaaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatcctgagtcaaaagattaggttcccctccaa |
102 |
Q |
| |
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|||||||| || |||||||||||| | | ||| |||||| ||||||||||||||||||| | ||||| |||| ||||||| | || || | || |||| |
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| T |
2935320 |
agctccattaggaaatgaacatctctggtatatagttcatctgagagattcttgacagcttggtgaaggtcctcagtcaaagggtttggattgccaccaa |
2935419 |
T |
|
| Q |
103 |
tagagaactttgtccttcgtatatcttgaatgtgtt |
138 |
Q |
| |
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| ||||||||| |||||||||| |||| |||||||| |
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| T |
2935420 |
tggagaactttttccttcgtatctcttcaatgtgtt |
2935455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 2925501 - 2925624
Alignment:
| Q |
18 |
tgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatcctgagtcaaaagattaggttcccctccaatagagaactttgtcc |
117 |
Q |
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||||||||||| || |||||||| || ||||||| |||||||||| ||||||||| | |||||| ||||||||| ||| ||||| || |||||| | | |
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| T |
2925501 |
tgaacatctttggcgtaaagttccgcaaagagatttttgacagcatgatgaagatcttcagtcaatggattaggtttcccaccaatgga-aacttttttc |
2925599 |
T |
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| Q |
118 |
ttcgtatatcttgaatgtgttcctt |
142 |
Q |
| |
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||||||| |||| ||||||||||| |
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| T |
2925600 |
ttcgtatctcttctatgtgttcctt |
2925624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 4911681 - 4911584
Alignment:
| Q |
32 |
ataaagttcagctgagagattcttgacagcattatgaagatcctgagtcaaaagattaggttcccctccaatagagaactttgtccttcgtatatctt |
129 |
Q |
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|||||||||||| ||||||||||| ||||| | ||||||||| | | ||||| | || |||| ||| ||||||||||| ||| |||||||||| |||| |
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| T |
4911681 |
ataaagttcagcagagagattcttaacagcttgatgaagatcttcaatcaaagggtttggtttcccgccaatagagaattttctccttcgtatctctt |
4911584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 32695337 - 32695395
Alignment:
| Q |
15 |
aaatgaacatcttttgcataaagttcagctgagagattcttgacagcattatgaagatc |
73 |
Q |
| |
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||||||| |||||| |||||||||||||| ||||||| |||||||||| ||||||||| |
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| T |
32695337 |
aaatgaatatctttagcataaagttcagcggagagatatttgacagcatgatgaagatc |
32695395 |
T |
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