View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9383_low_13 (Length: 248)
Name: NF9383_low_13
Description: NF9383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9383_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 9 - 185
Target Start/End: Complemental strand, 1502556 - 1502380
Alignment:
| Q |
9 |
ggtgttcatgtcaatacttcatttatccaaaccacatttaaaatctgcatgtgaatgtgaggcatgcatggtctagattttaagctcgattttttaaatt |
108 |
Q |
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| T |
1502556 |
ggtgttcatgtcaatacttcatttatccaaaccacatttaaaatctacatgtgaatgtgaggcatgcatggtctagattttaagctcgattttttaaatt |
1502457 |
T |
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| Q |
109 |
taaagaaaatcaaaaccagctttaaaatctacatgcaagacatgcataccgtcatctcaatcatgcattttatatcc |
185 |
Q |
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| T |
1502456 |
taaagaaaatcaataccagctttaaaatctacatgcaagacatgcataccgtcatctcaatcatgcatattatatcc |
1502380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 1502716 - 1502676
Alignment:
| Q |
85 |
attttaagctcgattttttaaatttaaagaaaatcaaaacc |
125 |
Q |
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| T |
1502716 |
attttaagctcggatttttagatttaaagaaaatcaaaacc |
1502676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 123
Target Start/End: Original strand, 11734211 - 11734254
Alignment:
| Q |
80 |
tctagattttaagctcgattttttaaatttaaagaaaatcaaaa |
123 |
Q |
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| T |
11734211 |
tctagattttaaacttgattttttaaatttaaagaaaatcaaaa |
11734254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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