View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9383_low_5 (Length: 319)
Name: NF9383_low_5
Description: NF9383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9383_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 16950950 - 16951241
Alignment:
| Q |
14 |
aaaacaaacatggcgtaagctagtagaaaaagtaaccattgaagctcacaaatggcaatgtcatcaaaatgttttgatgaatgctttactaaaggatgaa |
113 |
Q |
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| T |
16950950 |
aaaacaaacatggcgtaagctagtagaaaaagtaaccattgaagctcacaaatggcaatgtcatcaaaatgttttgatgaatgctttactaaaggatgaa |
16951049 |
T |
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| Q |
114 |
gccttctcctcaacggtggttaagcatttcttcagcctctttgcaattcttcccctatggtggttttggctctatggctttgttgatgatagcttttgtt |
213 |
Q |
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| T |
16951050 |
gccttctcctcaacggtggttaagcatttcttcagcctctttgcaattcttcccctatggtggttttggctctatggctttgttgatgatagcttttgtt |
16951149 |
T |
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| Q |
214 |
aagtggttaagcatgcatgctttgtggtttcttcttaatggttaagcattccgatttcttcctctctcgttatattttctttcatttttgatgt |
307 |
Q |
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| T |
16951150 |
aagtggttaagcatgcatgctttgtggtttcttcttaatggttaagcattccgatttcttc--ctctcgttatattttctttcattttttatgt |
16951241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 17021615 - 17021906
Alignment:
| Q |
14 |
aaaacaaacatggcgtaagctagtagaaaaagtaaccattgaagctcacaaatggcaatgtcatcaaaatgttttgatgaatgctttactaaaggatgaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17021615 |
aaaacaaacatggcgtaagctagtagaaaaagtaaccattgaagctcacaaatggcaatgtcatcaaaatgttttgatgaatgctttactaaaggatgaa |
17021714 |
T |
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| Q |
114 |
gccttctcctcaacggtggttaagcatttcttcagcctctttgcaattcttcccctatggtggttttggctctatggctttgttgatgatagcttttgtt |
213 |
Q |
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| T |
17021715 |
gccttctcctcaacggtggttaagcatttcttcagcctctttgcaattcttcccctatggtggttttggctctatggctttgttgatgatagcttttgtt |
17021814 |
T |
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| Q |
214 |
aagtggttaagcatgcatgctttgtggtttcttcttaatggttaagcattccgatttcttcctctctcgttatattttctttcatttttgatgt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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| T |
17021815 |
aagtggttaagcatgcatgctttgtggtttcttcttaatggttaagcattccgatttcttc--ctctcgttatattttctttcattttttatgt |
17021906 |
T |
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