View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9383_low_6 (Length: 306)
Name: NF9383_low_6
Description: NF9383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9383_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 292
Target Start/End: Complemental strand, 3556192 - 3555916
Alignment:
| Q |
7 |
gtataaaaacattgagaatgattagcctggtaaacattaacatcagtttagcaattatagcacaaagggggtactaatttcctaatttcctaattcatga |
106 |
Q |
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|||||||||||||||||||||||||| || |||||||||||| | ||||| |||||||||||||||||| | ||||||||||||||||||| |
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| T |
3556192 |
gtataaaaacattgagaatgattagcatgacaaacattaacataattttagaaattatagcacaaagggg---------tactaatttcctaattcatga |
3556102 |
T |
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| Q |
107 |
caagcttaacaaagtacatttcctcacataaattaacacaatcccaagggtgggaactaactaaggaactcacatgaatttactgagatttgcttcaagc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||| |
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| T |
3556101 |
caagcttaacaaagtacatttcctcacataaattaacacaatcccaagggtgggaacaaactaaggaactcacgtgtatttactgagatttgcttcaagc |
3556002 |
T |
|
| Q |
207 |
tcctaagcttttacaccaaactctagcccatagcttatcaccaacaactcgattccttggttcagcacaaaacccatatcagtccc |
292 |
Q |
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|||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3556001 |
tcctaagcttctacaccaaaccctaccccatagcttatcaccaacaactcgattccttggttcagcacaaaacccatatcagtccc |
3555916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 142 - 292
Target Start/End: Complemental strand, 380408 - 380258
Alignment:
| Q |
142 |
acacaatcccaagggtgggaactaactaaggaactcacatgaatttactgagatttgcttcaagctcctaagcttttacaccaaactctagcccatagct |
241 |
Q |
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|||||| ||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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| T |
380408 |
acacaaacccaatggtatgaactaactaag-aactcacatgtatttactgagatttgcttcaagctcctaagcttctacaccaaaccctagcccatagct |
380310 |
T |
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| Q |
242 |
tatcaccaacaactcgattcctt-ggttcagcacaaaacccatatcagtccc |
292 |
Q |
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|||||| |||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
380309 |
tatcacaaacaactcgattccttgggttcaacacaaaacccatatcagtccc |
380258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 172 - 290
Target Start/End: Original strand, 22828128 - 22828246
Alignment:
| Q |
172 |
gaactcacatgaatttactgagatttgcttcaagctcctaagcttttacaccaaactctagcccatagcttatcaccaacaactcgattccttggttcag |
271 |
Q |
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||||||||||| |||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22828128 |
gaactcacatgtatttactgagatttgcttcaagcttctaagcttctacaccaaaccctagcccatagcttatcaccaacaactcgattccttggttcag |
22828227 |
T |
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| Q |
272 |
cacaaaacccatatcagtc |
290 |
Q |
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||||||||||||||||||| |
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| T |
22828228 |
cacaaaacccatatcagtc |
22828246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 161 - 292
Target Start/End: Complemental strand, 23307716 - 23307585
Alignment:
| Q |
161 |
aactaactaaggaactcacatgaatttactgagatttgcttcaagctcctaagcttttacaccaaactctagcccatagcttatcaccaacaactcgatt |
260 |
Q |
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||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | ||| |
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| T |
23307716 |
aactatctaaagaactcacatgtatttactgagatttgcttcaagctcctaagcttctacaccaaaccctagcccatagcttatcaccaacaaatttatt |
23307617 |
T |
|
| Q |
261 |
ccttggttcagcacaaaacccatatcagtccc |
292 |
Q |
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||||||||||||||||||| | |||||||||| |
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| T |
23307616 |
ccttggttcagcacaaaactcgtatcagtccc |
23307585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 181
Target Start/End: Original strand, 24855915 - 24855950
Alignment:
| Q |
146 |
aatcccaagggtgggaactaactaaggaactcacat |
181 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
24855915 |
aatcccaagggtgggaactaactaaggaactcacat |
24855950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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