View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9383_low_9 (Length: 288)
Name: NF9383_low_9
Description: NF9383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9383_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 24 - 274
Target Start/End: Complemental strand, 6956893 - 6956643
Alignment:
| Q |
24 |
agaaatatggtgaagatgttttgaaacgattctacacgttacactgcaatccaccagaaataccaatggagatgggaatcaaactcggcaaagatgttga |
123 |
Q |
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| T |
6956893 |
agaaatatggtgaagatgttttgaaaagattctacacgttacactgcaatccaccagaaataccaatagagatgggaatcaaactcggcaaagatgttga |
6956794 |
T |
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| Q |
124 |
tgagaatctagttgactctacattgtataagaaaattataggctcactgagatacttaagcaatacaaacctaattttacattccttgtgggataagtaa |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6956793 |
tgagaatctagttgactctacattgtataagaaaattataggctcactgagatacttaagcaatacaaacctaatttgacattccttgtgggataagtaa |
6956694 |
T |
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| Q |
224 |
gcaaattcatgaagaaaaaagtacatttgggtaattattcatgtttagtga |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
6956693 |
gcaaattcatgaagaaaaaagtacatttgggtaattattcacgtttagtga |
6956643 |
T |
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