View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9384_high_2 (Length: 452)
Name: NF9384_high_2
Description: NF9384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9384_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 103 - 425
Target Start/End: Original strand, 44892855 - 44893177
Alignment:
| Q |
103 |
gagtattcattgaacgcactgaaatcgttattgaagatctgaacctatttcaatatgctggagtgttttactgtggagcaccggcacctattacagaact |
202 |
Q |
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| T |
44892855 |
gagtattcattgaatgcactgaaatcgttattgaagatctgaacctatttcaatatgcaggagtgttttactgtggagcaccggcacctattaaagaact |
44892954 |
T |
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| Q |
203 |
tcgtgggttagctttggaattttctcaggagagagcccccaaatttgattttcacaaggagaatttctagaaagataaacattaattattgaagatcaaa |
302 |
Q |
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| T |
44892955 |
tcgtgggttagctttggaattttctcaggagagagcccccaaatttgattttcacaaggagaatttctagaaagataaacattaattattgaagatcaaa |
44893054 |
T |
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| Q |
303 |
aaggacgggaacaaagacggtctttcacttttatcccactactatatgggagtaattgtttcacggttgaatgttgaatctaaactaaaaagtatgtttc |
402 |
Q |
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| T |
44893055 |
aaggacgggaacaaagacggtctttcacttttatcccactactatatgggagtaattgtttcacggttgaatgttgaatctaaactaaaaagtatgtttc |
44893154 |
T |
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| Q |
403 |
aattatactgtattctctctgct |
425 |
Q |
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| T |
44893155 |
aattatactgtattctctctgct |
44893177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 44892762 - 44892832
Alignment:
| Q |
1 |
taacaaagtcaacattttagagtttccattatcactgtaccattgtgatttcgtcaacttattgtgctacg |
71 |
Q |
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| T |
44892762 |
taacaaagtcaacattttagagtttccattatcactgtaccattgtgatttcgtcaacttattgtgctacg |
44892832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 44901980 - 44902044
Alignment:
| Q |
241 |
ccaaatttgattttcacaaggagaatttctagaaagataaacattaattattgaagatcaaaaagga |
307 |
Q |
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| T |
44901980 |
ccaaatttgatttccacaaggagaatttctagacagatggacatt-attgttgaaga-caaaaagga |
44902044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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