View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9384_high_6 (Length: 255)

Name: NF9384_high_6
Description: NF9384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9384_high_6
NF9384_high_6
[»] chr1 (3 HSPs)
chr1 (1-236)||(47567414-47567649)
chr1 (1-91)||(47574296-47574389)
chr1 (1-91)||(47584013-47584106)
[»] chr8 (1 HSPs)
chr8 (29-91)||(10401928-10401990)
[»] chr6 (9 HSPs)
chr6 (35-91)||(20236382-20236438)
chr6 (35-91)||(22130366-22130422)
chr6 (35-91)||(22206567-22206623)
chr6 (33-91)||(21968553-21968611)
chr6 (38-91)||(18979959-18980012)
chr6 (38-91)||(20084255-20084308)
chr6 (35-91)||(20232973-20233029)
chr6 (35-91)||(22126957-22127013)
chr6 (33-91)||(22086446-22086504)
[»] scaffold0074 (1 HSPs)
scaffold0074 (35-91)||(49342-49398)
[»] scaffold0007 (1 HSPs)
scaffold0007 (35-91)||(6888-6944)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 47567414 - 47567649
Alignment:
Q  1 tctagtgagattactaggatattatttggaagatgagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttatttctcaacata 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567414 tctagtgagattactaggatattatttggaagatgagaagatacttatctatgagtatgtgccaaacaagagtcttgattactttttatttctcaacata 47567513  T
Q  101 ccctcacattattctttaatcatattaccacagtttctctgcatatataaattacccaccactaccttactgtaactgttcaacttcaagcaacaacact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47567514 ccctcacattattctttaatcatattaccacagtttctctgcatatataaattacccaccactaccttactgtaactgttcaacttcaagcaacaacact 47567613  T
Q  201 aattatgattactcaccaaacaacacatacaatacc 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  47567614 aattatgattactcaccaaacaacacatacaatacc 47567649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 47574296 - 47574389
Alignment:
Q  1 tctagtgagattactaggatattatttggaagatgag---aaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 91  Q
    |||||| ||||||||||||| || |||||||||||||   || ||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  47574296 tctagtaagattactaggattttgtttggaagatgaggagaagatactaatctttgagtatgtgccaaacaagagtcttgattactttttattt 47574389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 47584013 - 47584106
Alignment:
Q  1 tctagtgagattactaggatattatttggaagatga---gaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 91  Q
    |||||||||||||||||||| || ||||||||||||   ||| ||||||||||||||||||||||| ||||| ||||||||||||||| |||||    
T  47584013 tctagtgagattactaggattttgtttggaagatgaagagaagatacttatctatgagtatgtgccgaacaaaagtcttgattactttctattt 47584106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 10401990 - 10401928
Alignment:
Q  29 gaagatgagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 91  Q
    ||||| |||||||||||||| ||||| |||||||| ||||||||||||||| |||||||||||    
T  10401990 gaagaggagaaaatacttatatatgaatatgtgccgaacaagagtcttgatcactttttattt 10401928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 20236438 - 20236382
Alignment:
Q  35 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 91  Q
    |||||||||||||| ||||| | |||||| ||||||||||||||||||||| |||||    
T  20236438 gagaaaatacttatttatgaatttgtgcccaacaagagtcttgattactttctattt 20236382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 22130422 - 22130366
Alignment:
Q  35 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 91  Q
    |||||||||||||| ||||| | |||||| ||||||||||||||||||||| |||||    
T  22130422 gagaaaatacttatttatgaatttgtgcccaacaagagtcttgattactttctattt 22130366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 22206567 - 22206623
Alignment:
Q  35 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 91  Q
    |||||||||||||| ||||| | |||||| ||||||||||||||||||||| |||||    
T  22206567 gagaaaatacttatttatgaatttgtgcccaacaagagtcttgattactttctattt 22206623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 21968611 - 21968553
Alignment:
Q  33 atgagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 91  Q
    ||||||| |||||||| ||||| |||||  | |||||||||||||||||||||||||||    
T  21968611 atgagaagatacttatttatgaatatgtttccaacaagagtcttgattactttttattt 21968553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 18980012 - 18979959
Alignment:
Q  38 aaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 91  Q
    ||||||||||| ||||| |||||||||||||| |||||||||| |||| |||||    
T  18980012 aaaatacttatttatgaatatgtgccaaacaaaagtcttgatttctttctattt 18979959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 20084308 - 20084255
Alignment:
Q  38 aaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 91  Q
    ||||||||||| ||||| |||||||||||||| |||||||||| |||| |||||    
T  20084308 aaaatacttatttatgaatatgtgccaaacaaaagtcttgatttctttctattt 20084255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 20232973 - 20233029
Alignment:
Q  35 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 91  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||| | |||||||||    
T  20232973 gagaaaatacttatttatgaatatgtgccaaacaagggacttgatcagtttttattt 20233029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 22126957 - 22127013
Alignment:
Q  35 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 91  Q
    |||||||||||||| ||||| ||||||||||||||| | |||||| | |||||||||    
T  22126957 gagaaaatacttatttatgaatatgtgccaaacaagggacttgatcagtttttattt 22127013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 22086504 - 22086446
Alignment:
Q  33 atgagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 91  Q
    ||||||| |||||||| ||||| |||||  | ||||| |||||||||||||||||||||    
T  22086504 atgagaagatacttatttatgaatatgtttccaacaaaagtcttgattactttttattt 22086446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 49342 - 49398
Alignment:
Q  35 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 91  Q
    |||||||||||||| ||||| | |||||| ||||| |||||||||| |||| |||||    
T  49342 gagaaaatacttatttatgaatttgtgcccaacaaaagtcttgatttctttctattt 49398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 91
Target Start/End: Original strand, 6888 - 6944
Alignment:
Q  35 gagaaaatacttatctatgagtatgtgccaaacaagagtcttgattactttttattt 91  Q
    |||||||||||||| ||||| | |||||| ||||| |||||||||| |||| |||||    
T  6888 gagaaaatacttatttatgaatttgtgcccaacaaaagtcttgatttctttctattt 6944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University