View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9384_low_1 (Length: 598)

Name: NF9384_low_1
Description: NF9384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9384_low_1
NF9384_low_1
[»] chr6 (6 HSPs)
chr6 (177-582)||(8041542-8041948)
chr6 (320-582)||(7971740-7972002)
chr6 (347-582)||(8031834-8032069)
chr6 (371-534)||(7979356-7979519)
chr6 (125-170)||(7972036-7972081)
chr6 (125-177)||(8041417-8041469)
[»] chr2 (3 HSPs)
chr2 (331-582)||(41382139-41382390)
chr2 (195-321)||(45123544-45123670)
chr2 (409-449)||(43853161-43853201)
[»] chr4 (1 HSPs)
chr4 (173-319)||(23523052-23523199)
[»] scaffold0531 (1 HSPs)
scaffold0531 (346-579)||(3266-3499)
[»] chr5 (2 HSPs)
chr5 (173-321)||(31384737-31384886)
chr5 (173-322)||(26558385-26558535)
[»] chr7 (1 HSPs)
chr7 (382-572)||(14198715-14198905)
[»] chr3 (1 HSPs)
chr3 (194-233)||(48961307-48961346)


Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 177 - 582
Target Start/End: Original strand, 8041542 - 8041948
Alignment:
Q  177 tggcacac-ataaaggaagctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatattaattc 275  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  8041542 tggcacacgataaaggaagctagtgttattatatgtttcaaataaatgaaagtcaacaaagcttataatctcaagtatatctaaagaccaatattaattc 8041641  T
Q  276 gttgctattcgtgcactaccatgtcgcaccaacaagcttcttcctttaatgaatcaatatttgttttactctactcaggggtccaggattggctatactt 375  Q
    |||||||||| ||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  8041642 gttgctattcatgcactaacatgttgcaccaacaagctttttcctttaatgaatcaatatttgttttattctactcaggggtccaggtttggctatactt 8041741  T
Q  376 gttctttcatgggtcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggc 475  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8041742 gtcctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggc 8041841  T
Q  476 aacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcggctcggacattgtctacatggtcaccggaggtgc 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  8041842 aacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccggaggtgc 8041941  T
Q  576 atcattg 582  Q
    |||||||    
T  8041942 atcattg 8041948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 320 - 582
Target Start/End: Complemental strand, 7972002 - 7971740
Alignment:
Q  320 tttaatgaatcaatatttgttttactctactcaggggtccaggattggctatacttgttctttcatgggtcatcacactgtacaccttgtggcaaatggt 419  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7972002 tttaatgaatcaatatttgttttactctaatcaggggtccaggattggctatacttgttctttcatggatcatcacactgtacaccttgtggcaaatggt 7971903  T
Q  420 tgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcct 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7971902 tgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcct 7971803  T
Q  520 caacaacttgtggtacaggtcggctcggacattgtctacatggtcaccggaggtgcatcattg 582  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7971802 caacaacttgtggtacaggtcgggtcggacattgtctacatggtcaccggaggtgcatcattg 7971740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 347 - 582
Target Start/End: Original strand, 8031834 - 8032069
Alignment:
Q  347 tactcaggggtccaggattggctatacttgttctttcatgggtcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaa 446  Q
    |||||||||||||||| ||| |||||||| |  | ||||||  |||||| ||||| || |||||||||||||||||||||||||| ||| |||| |||||    
T  8031834 tactcaggggtccaggtttgactatacttctcttatcatggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaatgattccgggaaa 8031933  T
Q  447 acgtcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcggctcg 546  Q
    |||| |||||| |||  |||||||||| |||||||| ||||| |||||||||||  | |  |||||| | |||||||||||| | ||| | || ||        
T  8031934 acgttttgatagataccatgaattaggtcaacatgcgtttggcgaaaagttaggcctttatattgtggttcctcaacaacttatagtagaagttgggggc 8032033  T
Q  547 gacattgtctacatggtcaccggaggtgcatcattg 582  Q
    ||||||||||||||||||||||||||||||||||||    
T  8032034 gacattgtctacatggtcaccggaggtgcatcattg 8032069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 371 - 534
Target Start/End: Complemental strand, 7979519 - 7979356
Alignment:
Q  371 tacttgttctttcatgggtcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaatt 470  Q
    ||||||||||||||||| |||||||| | |||||  | ||||||||||||||||||||||| |||||||| ||||||||  |||||| |||  |||||||    
T  7979519 tacttgttctttcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaatt 7979420  T
Q  471 agggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggta 534  Q
    ||| ||||||||||||||  |||| |||||  | |  |||||| ||||||||||||||||||||    
T  7979419 aggtcaacatgcttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggta 7979356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 7972081 - 7972036
Alignment:
Q  125 gataaaggtttcactaaaatgaatggtagaagttgcaaattctatg 170  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  7972081 gataaaggtttcactaaaatgaatggtataagttgcaaattctatg 7972036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 8041417 - 8041469
Alignment:
Q  125 gataaaggtttcactaaaatgaatggtagaagttgcaaattctatgaacgact 177  Q
    |||||||||||||||||||||| | |||||||||||||||||| || ||||||    
T  8041417 gataaaggtttcactaaaatgattagtagaagttgcaaattctctgtacgact 8041469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 172; Significance: 4e-92; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 331 - 582
Target Start/End: Complemental strand, 41382390 - 41382139
Alignment:
Q  331 aatatttgttttactctactcaggggtccaggattggctatacttgttctttcatgggtcatcacactgtacaccttgtggcaaatggttgagatgcatg 430  Q
    ||||||| |||||||||| ||||||||||||| |||  ||||||| | ||||||||| ||||||| || |||||| ||||||||||||||||||||||||    
T  41382390 aatatttcttttactctattcaggggtccaggtttgattatacttatcctttcatggatcatcactctctacaccctgtggcaaatggttgagatgcatg 41382291  T
Q  431 agatggttccaggaaaacgtcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgt 530  Q
    |||||||||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  41382290 agatggttccgggaaaacgtcttgatacatataatgaattgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgt 41382191  T
Q  531 ggtacaggtcggctcggacattgtctacatggtcaccggaggtgcatcattg 582  Q
    |||||| || ||   |||||||||||||||||||||||||||||||||||||    
T  41382190 ggtacaagttggggtggacattgtctacatggtcaccggaggtgcatcattg 41382139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 195 - 321
Target Start/End: Complemental strand, 45123670 - 45123544
Alignment:
Q  195 ctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatattaattcgttgctattcgtgcactac 294  Q
    |||||||||||| ||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  45123670 ctagtgttattacatttttctaataaatgaatgtcaacaaagcttacaatctcaagtatatccaaaggccaatattaattcgttgctatttgtgcactac 45123571  T
Q  295 catgtcgcaccaacaagcttcttcctt 321  Q
    |||||||||||||||||||| ||||||    
T  45123570 catgtcgcaccaacaagctttttcctt 45123544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 409 - 449
Target Start/End: Original strand, 43853161 - 43853201
Alignment:
Q  409 tggcaaatggttgagatgcatgagatggttccaggaaaacg 449  Q
    |||||||||||||| |||||||| |||||||||||||||||    
T  43853161 tggcaaatggttgaaatgcatgaaatggttccaggaaaacg 43853201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 173 - 319
Target Start/End: Complemental strand, 23523199 - 23523052
Alignment:
Q  173 cgactggcacac-ataaaggaagctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatatta 271  Q
    ||||| |||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  23523199 cgactagcacacgataaaggcagctagtgttattatatttttctaataaatgaaagtcaacaaagcttacaatctcaattatatccaaaggccaatatta 23523100  T
Q  272 attcgttgctattcgtgcactaccatgtcgcaccaacaagcttcttcc 319  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  23523099 attcgttgctattcgtgcactaccatgtcacaccaacaagctttttcc 23523052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 346 - 579
Target Start/End: Complemental strand, 3499 - 3266
Alignment:
Q  346 ctactcaggggtccaggattggctatacttgttctttcatgggtcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaa 445  Q
    ||||||||||||||||| ||| |||||||| |  | |||||| ||||||| ||||| || |||||||||||||||||||||||||| |||||||| ||||    
T  3499 ctactcaggggtccaggtttgactatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaa 3400  T
Q  446 aacgtcttgatacatataatgaattagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcggctc 545  Q
    ||||| ||||||  ||  ||||| | || ||||| || ||||| |||||||||||  | |  |||||| |||||||||||||||| ||| | || ||       
T  3399 aacgttttgataggtaccatgaactgggacaacacgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagtagaagttggggt 3300  T
Q  546 ggacattgtctacatggtcaccggaggtgcatca 579  Q
    | ||||||| ||||||||||||||||||||||||    
T  3299 gaacattgtttacatggtcaccggaggtgcatca 3266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 173 - 321
Target Start/End: Original strand, 31384737 - 31384886
Alignment:
Q  173 cgactggcacaca-taaaggaagctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatatta 271  Q
    ||||||||||||  |||||| |||||||||| |||||||||||||||||||||||||||||  | |||| ||||||||| |||||||||  | || ||||    
T  31384737 cgactggcacacggtaaaggcagctagtgttgttatatttttcaaataaatgaaagtcaacgcaacttacaatctcaagcatatccaaaagctaacatta 31384836  T
Q  272 attcgttgctattcgtgcactaccatgtcgcaccaacaagcttcttcctt 321  Q
    |||||||||| ||||| ||||| |||||||||||||||||||| ||||||    
T  31384837 attcgttgcttttcgtccactagcatgtcgcaccaacaagctttttcctt 31384886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 173 - 322
Target Start/End: Complemental strand, 26558535 - 26558385
Alignment:
Q  173 cgactggcacac-ataaaggaagctagtgttattatatttttcaaataaatgaaagtcaacaaagcttataatctcaagtatatccaaagaccaatatta 271  Q
    |||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||||| |  ||| ||||||||| ||||| |||| |  ||||||    
T  26558535 cgactggcacacgatgcaggtagctagtgttattatatttttcaaataaatgaaagtcaacacaatttacaatctcaagcatatctaaaggctgatatta 26558436  T
Q  272 attcgttgctattcgtgcactaccatgtcgcaccaacaagcttcttccttt 322  Q
     ||||||| | ||||||||||| |||||||||||||||| ||| |||||||    
T  26558435 tttcgttggttttcgtgcactaacatgtcgcaccaacaaactttttccttt 26558385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 382 - 572
Target Start/End: Complemental strand, 14198905 - 14198715
Alignment:
Q  382 tcatgggtcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaattagggcaacatg 481  Q
    |||||| |||||||| | ||||| || ||||||||||||||||||||||| ||||| || || |||||| | |||| |||| ||||| | || ||| |||    
T  14198905 tcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatg 14198806  T
Q  482 cttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaggtcggctcggacattgtctacatggtcaccggagg 572  Q
    |||||||||||||||| ||  |||  |||||  |||| ||||||||| | ||  | ||||||    |||||||||||||||| ||||||||    
T  14198805 cttttggtgaaaagttgggtctgtatattgttgtgccacaacaacttattgttgaagtcggcgttaacattgtctacatggtaaccggagg 14198715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 194 - 233
Target Start/End: Complemental strand, 48961346 - 48961307
Alignment:
Q  194 gctagtgttattatatttttcaaataaatgaaagtcaaca 233  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48961346 gctagtgttattatatttttcaaataaatgaaagtcaaca 48961307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University