View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9384_low_13 (Length: 329)
Name: NF9384_low_13
Description: NF9384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9384_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 326
Target Start/End: Original strand, 13260769 - 13261079
Alignment:
| Q |
16 |
acatcaagattactcgtctctacttcattaggatcagtaggcagaactagaactggtgccccatcagaatcttcaaaactagatgaatgaacctcatcta |
115 |
Q |
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| T |
13260769 |
acatcgagattactcgtctctacttcattaggatcaataggcagaacttgaactggtgccccatcagaatcttcaaaactagatgaatgaacctcatcta |
13260868 |
T |
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| Q |
116 |
gagtgtcttgaacagccacattagtgttctcgtcggtattttccacacatgtcgatgcatcaaggcacattgcaccaggttcgtccatagcaccattatt |
215 |
Q |
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| T |
13260869 |
gagtgtcttgaacagccacattagtgttctcgtcggtattttccacacatgtcgatgcatcaaggcacattgcagcaggttcgtccatagcaccattgtt |
13260968 |
T |
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| Q |
216 |
atcatccaaattttgaacttgttcaaccgaatggccactggattccttggaagaaacatctaaaatgttcacactatacaaggatttatcactcactatc |
315 |
Q |
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| T |
13260969 |
atcatccaaattttgaacttgttcaaccgaacggccactggattccttggaagaaacatctaaagaattcacactatacaaggatttatcactcactatc |
13261068 |
T |
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| Q |
316 |
tctgctactcc |
326 |
Q |
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| T |
13261069 |
tcagcttctcc |
13261079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 13269819 - 13270043
Alignment:
| Q |
22 |
agattactcgtctctacttcattag---gatcagtaggcagaactagaactggtgccccatcagaatcttcaaaactagatgaatgaacctcatctagag |
118 |
Q |
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| T |
13269819 |
agatcactagtctctacttcattggttggatcagtaggcagaacttgaagtgctgtcccatctgaatcatcaaaactacacgaacaaacctcatctagat |
13269918 |
T |
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| Q |
119 |
tgtcttgaacagccacattagtgttctcgtcggtattttccacacatgtcgatgcatcaaggcacattgcaccaggttcgtccatagcaccattattatc |
218 |
Q |
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| T |
13269919 |
tatcttcaacaggcacatcggtgttctcatcagtatttttcgcacatgtggacacatcaaagcacattgcagcagcttcaacttgaacacaattattata |
13270018 |
T |
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| Q |
219 |
atccaaattttgaacttgttcaacc |
243 |
Q |
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| T |
13270019 |
atccaaattgggaacgtgttcaacc |
13270043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 157
Target Start/End: Original strand, 13269382 - 13269471
Alignment:
| Q |
68 |
ctggtgccccatcagaatcttcaaaactagatgaatgaacctcatctagagtgtcttgaacagccacattagtgttctcgtcggtatttt |
157 |
Q |
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| T |
13269382 |
ctggtgtcccatctgaatcttcaaagttagataaaagaacctcatgtagaatatcttcaaaagccacatctgtgttctcatcagtatttt |
13269471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 274
Target Start/End: Original strand, 13259827 - 13259891
Alignment:
| Q |
210 |
attattatcatccaaattttgaacttgttcaaccgaatggccactggattccttggaagaaacat |
274 |
Q |
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| T |
13259827 |
attattatcatccaatttgtgaagttgttcaaccaaacagccacttgattcctttggagaaacat |
13259891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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