View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9384_low_14 (Length: 301)

Name: NF9384_low_14
Description: NF9384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9384_low_14
NF9384_low_14
[»] chr1 (3 HSPs)
chr1 (1-178)||(1524267-1524444)
chr1 (147-218)||(50237384-50237455)
chr1 (145-228)||(5193871-5193954)
[»] chr8 (4 HSPs)
chr8 (1-214)||(38347732-38347946)
chr8 (147-221)||(26709529-26709603)
chr8 (93-214)||(14759171-14759292)
chr8 (93-214)||(26972716-26972837)
[»] chr5 (1 HSPs)
chr5 (57-217)||(23944276-23944436)
[»] chr3 (3 HSPs)
chr3 (77-228)||(53609049-53609200)
chr3 (173-217)||(17719203-17719247)
chr3 (173-217)||(19020432-19020476)
[»] scaffold0036 (1 HSPs)
scaffold0036 (90-216)||(68117-68243)
[»] chr6 (2 HSPs)
chr6 (167-220)||(27853794-27853847)
chr6 (93-208)||(24894604-24894719)
[»] chr2 (2 HSPs)
chr2 (145-220)||(570256-570331)
chr2 (135-216)||(40327437-40327518)
[»] chr7 (2 HSPs)
chr7 (168-217)||(1580005-1580054)
chr7 (131-208)||(23208672-23208749)
[»] chr4 (1 HSPs)
chr4 (183-228)||(46785330-46785375)


Alignment Details
Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 1524444 - 1524267
Alignment:
Q  1 tgagggagttcttactaggctcatcaatggtggggtgtaggccgaaattgaaggtgcggttttgatggggttgggtgttggccaaaaggttcttgaaata 100  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1524444 tgagggaggtcttgctaggctcgtcaatggtggggtgtaggccgaaattgaaggtgcggttttgatagggttgggtgttggccaaaaggttcttgaaata 1524345  T
Q  101 tttttgtgcttccgcttggagaatggaatcatcagaggaccaagtgccattagggagttggagcctgtgaattctatt 178  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1524344 tttttttgcttccgcttggagaatggaatcatcagaggaccaagtgtcattagggagttggagcctgtgaattctatt 1524267  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 50237384 - 50237455
Alignment:
Q  147 ccattagggagttggagcctgtgaattctatttttctttcttttaatgatggtttgagcatggaagaaagag 218  Q
    ||||| || ||||||||||| |||||| | ||| |||||||| ||||||| |||||||||||||| ||||||    
T  50237384 ccatttggaagttggagcctatgaattatgtttctctttcttctaatgatagtttgagcatggaaaaaagag 50237455  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 5193871 - 5193954
Alignment:
Q  145 tgccattagggagttggagcctgtgaattctatttttctttcttttaatgatggtttgagcatggaagaaagagctgattttgt 228  Q
    ||||||| || ||||| ||||| || ||||||||| |||| ||| | ||||| ||||||||||| ||||||||| | |||||||    
T  5193871 tgccatttggaagttgaagcctatggattctatttctcttccttctgatgatagtttgagcatgaaagaaagaggtaattttgt 5193954  T

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Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 38347946 - 38347732
Alignment:
Q  1 tgagggagttcttactaggctcatcaatggtggggtgtaggccgaaattgaaggtgcggttttgatggggttgggtgttggccaaaaggttcttgaaata 100  Q
    |||||||| |||| || || |||||||||||||||||||||||| | || |||||||||||||| || ||||| | ||| ||||||||||||||||| |     
T  38347946 tgagggagatcttgcttggttcatcaatggtggggtgtaggccgtagttaaaggtgcggttttggtgtggttgagagttagccaaaaggttcttgaattt 38347847  T
Q  101 ttttt-gtgcttccgcttggagaatggaatcatcagaggaccaagtgccattagggagttggagcctgtgaattctatttttctttcttttaatgatggt 199  Q
    ||||| | |||| ||||||||||||||  |||||||| ||||| ||||||||||||||||| || || |||||| |||| ||||||||| ||||||||||    
T  38347846 ttttttgagctttcgcttggagaatggtgtcatcagaagaccaggtgccattagggagttgtagtctatgaattatattattctttcttctaatgatggt 38347747  T
Q  200 ttgagcatggaagaa 214  Q
    ||| ||||| |||||    
T  38347746 ttgggcatgaaagaa 38347732  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 26709529 - 26709603
Alignment:
Q  147 ccattagggagttggagcctgtgaattctatttttctttcttttaatgatggtttgagcatggaagaaagagctg 221  Q
    |||||||| ||||| || ||||||||| |||||||||||||   ||||||||| || | ||||||| ||||||||    
T  26709529 ccattaggtagttgaaggctgtgaattttatttttctttctacgaatgatggtatgtgtatggaagtaagagctg 26709603  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 14759292 - 14759171
Alignment:
Q  93 ttgaaatatttttgtgcttccgcttggagaatggaatcatcagaggaccaagtgccattagggagttggagcctgtgaattctatttttctttcttttaa 192  Q
    |||||||| |||||||||||  |||||||| ||  |  |||| | ||||| || |||  ||||||||| ||||| || |  | ||||||||||||| |||    
T  14759292 ttgaaataattttgtgcttcttcttggagagtgtcactatcatatgaccatgtaccacaagggagttgcagcctatggacccgatttttctttcttctaa 14759193  T
Q  193 tgatggtttgagcatggaagaa 214  Q
    ||||||| ||||| ||||||||    
T  14759192 tgatggtctgagcgtggaagaa 14759171  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 214
Target Start/End: Complemental strand, 26972837 - 26972716
Alignment:
Q  93 ttgaaatatttttgtgcttccgcttggagaatggaatcatcagaggaccaagtgccattagggagttggagcctgtgaattctatttttctttcttttaa 192  Q
    |||||||| |||||||||||  |||||||| ||  |  |||| | ||||| || |||  ||||||||| ||||| || || | ||||||||||||| | |    
T  26972837 ttgaaataattttgtgcttcttcttggagagtgtcactatcatatgaccatgtaccacaagggagttgaagcctatggatccgatttttctttcttctga 26972738  T
Q  193 tgatggtttgagcatggaagaa 214  Q
    ||||||| ||||| ||||||||    
T  26972737 tgatggtctgagcgtggaagaa 26972716  T

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Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 57 - 217
Target Start/End: Complemental strand, 23944436 - 23944276
Alignment:
Q  57 cggttttgatggggttgggtgttggccaaaaggttcttgaaatatttttgtgcttccgcttggagaatggaatcatcagaggaccaagtgccattaggga 156  Q
    ||||| ||||| |||||||||||||| || |||||||||||||| ||||| |||||  ||||||||| ||  |  ||||  | |||| | ||||||||||    
T  23944436 cggttatgatgaggttgggtgttggcaaagaggttcttgaaatacttttgagcttcttcttggagaacggtgttgtcagttgtccaaataccattaggga 23944337  T
Q  157 gttggagcctgtgaattctatttttctttcttttaatgatggtttgagcatggaagaaaga 217  Q
    |||| ||||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||    
T  23944336 gttgaagcctatgaattctattattctttcttctaatgattgtttgagcatggaagaaaga 23944276  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 228
Target Start/End: Original strand, 53609049 - 53609200
Alignment:
Q  77 gttggccaaaaggttcttgaaatatttttgtgcttccgcttggagaatggaatcatcagaggaccaagtgccattagggagttggagcctgtgaattcta 176  Q
    |||||| ||||||||||||||||| ||||| |||||  ||||||| | || |  ||||   | |||| ||||||| ||||| || || || |||||| ||    
T  53609049 gttggcaaaaaggttcttgaaatacttttgagcttcttcttggaggacggtactatcatttgtccaaatgccattggggagctgaagtctatgaatttta 53609148  T
Q  177 tttttctttcttttaatgatggtttgagcatggaagaaagagctgattttgt 228  Q
    ||||||||||||  |||||| | |||||||||||||||||| ||| ||||||    
T  53609149 tttttctttcttcgaatgatagcttgagcatggaagaaagaactgtttttgt 53609200  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 17719203 - 17719247
Alignment:
Q  173 tctatttttctttcttttaatgatggtttgagcatggaagaaaga 217  Q
    |||||| ||||||||| ||||||| ||||||||||| ||||||||    
T  17719203 tctattcttctttcttctaatgatagtttgagcatgaaagaaaga 17719247  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 19020432 - 19020476
Alignment:
Q  173 tctatttttctttcttttaatgatggtttgagcatggaagaaaga 217  Q
    |||||| ||||||||| ||||||| ||||||||||| ||||||||    
T  19020432 tctattcttctttcttctaatgatagtttgagcatgaaagaaaga 19020476  T

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Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 216
Target Start/End: Complemental strand, 68243 - 68117
Alignment:
Q  90 ttcttgaaatatttttgtgcttccgcttggagaatggaatcatcagaggaccaagtgccattagggagttggagcctgtgaattctatttttctttcttt 189  Q
    ||||||||||| ||||| || ||| |||| ||||||     ||||||||||||||| |||  ||||||||| || || || ||||||||| | ||||||     
T  68243 ttcttgaaatagttttgggcctcctcttgaagaatgtcgctatcagaggaccaagtaccacaagggagttgaagtctatggattctatttctttttcttc 68144  T
Q  190 taatgatggtttgagcatggaagaaag 216  Q
    | ||||| |||||||||||||||||||    
T  68143 tgatgatagtttgagcatggaagaaag 68117  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 27853794 - 27853847
Alignment:
Q  167 gtgaattctatttttctttcttttaatgatggtttgagcatggaagaaagagct 220  Q
    ||||||||||||| |||||||| | ||||||||||||||||| |||||||||||    
T  27853794 gtgaattctatttctctttcttctgatgatggtttgagcatgaaagaaagagct 27853847  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 208
Target Start/End: Original strand, 24894604 - 24894719
Alignment:
Q  93 ttgaaatatttttgtgcttccgcttggagaatggaatcatcagaggaccaagtgccattagggagttggagcctgtgaattctatttttctttcttttaa 192  Q
    ||||| |||||||| |||||  ||||||| ||||    |||||| |||||| ||||||||||||| || || |  || ||||||||| |||||||| | |    
T  24894604 ttgaagtatttttgagcttcttcttggaggatggtgctatcagaagaccaaatgccattagggagctgaagtcgatggattctatttctctttcttctta 24894703  T
Q  193 tgatggtttgagcatg 208  Q
    |||| |||||||||||    
T  24894704 tgatagtttgagcatg 24894719  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 220
Target Start/End: Complemental strand, 570331 - 570256
Alignment:
Q  145 tgccattagggagttggagcctgtgaattctatttttctttcttttaatgatggtttgagcatggaagaaagagct 220  Q
    |||||||||||||||| ||| |||| ||||||||| |||| ||| |||| || ||||||||||| ||||| |||||    
T  570331 tgccattagggagttgaagcttgtggattctatttctcttccttctaataatagtttgagcatgaaagaatgagct 570256  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 216
Target Start/End: Complemental strand, 40327518 - 40327437
Alignment:
Q  135 gaggaccaagtgccattagggagttggagcctgtgaattctatttttctttcttttaatgatggtttgagcatggaagaaag 216  Q
    ||||||||||| |||   ||||||||||| || |||||||| ||| | |||||| | ||||| ||||| |||||||||||||    
T  40327518 gaggaccaagtaccacatgggagttggagtctatgaattctgtttctttttcttctgatgatagtttgtgcatggaagaaag 40327437  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 1580005 - 1580054
Alignment:
Q  168 tgaattctatttttctttcttttaatgatggtttgagcatggaagaaaga 217  Q
    ||||||||||| || ||||||  |||||||||||||| ||||||||||||    
T  1580005 tgaattctattcttgtttcttccaatgatggtttgagaatggaagaaaga 1580054  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 23208672 - 23208749
Alignment:
Q  131 atcagaggaccaagtgccattagggagttggagcctgtgaattctatttttctttcttttaatgatggtttgagcatg 208  Q
    |||||| ||||| |||||||||||||| || || |  |||||||||||| |||||||  | ||||| |||||||||||    
T  23208672 atcagaagaccatgtgccattagggagctgaagtcgatgaattctatttctctttctccttatgatagtttgagcatg 23208749  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 46785330 - 46785375
Alignment:
Q  183 tttcttttaatgatggtttgagcatggaagaaagagctgattttgt 228  Q
    |||||| |||||||||||||||||||||| |||||| || ||||||    
T  46785330 tttcttctaatgatggtttgagcatggaaaaaagagttgtttttgt 46785375  T

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