View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9384_low_17 (Length: 240)
Name: NF9384_low_17
Description: NF9384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9384_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6037561 - 6037783
Alignment:
| Q |
1 |
cggtaacttgctgaacaagttacttagttgatttagcctagtataaatacttgatgtgtaatcattcaggcaatggtgaatattttcttcaattctttca |
100 |
Q |
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| T |
6037561 |
cggtaacttgctcaacaagttacttagttgatttagcctaatataaatacttgatgtgtaatcattcaggcaatggtgaatattttcttcaattctttca |
6037660 |
T |
|
| Q |
101 |
tttgtcaaacttgctccaatattgaataactgcaattgaatcgtcatgagtaacacagttagacatctgagnnnnnnnnnnnnnngattcacttcgaatc |
200 |
Q |
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| T |
6037661 |
tttgtcaaacttgctccaatattgaataactgcaattgaatcgtcatgagtaacacagttagacatctgagaaaaaagtaaaaaagattcacttcgaatc |
6037760 |
T |
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| Q |
201 |
cacagagtttgtcgtgacatgat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
6037761 |
cacagagtttgtcgtgacatgat |
6037783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 31475619 - 31475681
Alignment:
| Q |
105 |
tcaaacttgctccaatattgaataactgcaattgaatcgtcatgagtaacacagttagacatc |
167 |
Q |
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| T |
31475619 |
tcaaacctgctccaataatgaataactccaatttaatcttcatgagtaacacagttagacatc |
31475681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 105 - 167
Target Start/End: Original strand, 40843001 - 40843063
Alignment:
| Q |
105 |
tcaaacttgctccaatattgaataactgcaattgaatcgtcatgagtaacacagttagacatc |
167 |
Q |
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|||||| |||||||||| |||||||||| |||| |||| |||||||||||||||||||||||| |
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| T |
40843001 |
tcaaacctgctccaataatgaataactggaatttaatcttcatgagtaacacagttagacatc |
40843063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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