View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9384_low_22 (Length: 220)
Name: NF9384_low_22
Description: NF9384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9384_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 5351805 - 5351597
Alignment:
| Q |
1 |
agtggaacaattcgtgataacatactctttggaaaattaatggaaaggaacagatatgagaatgcaataaaagcatgtgctttggacaaggatatagatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5351805 |
agtggaacaattcgtgataacatactctttggaaaattaatggaaaggaacagatatgagaatgcaataaaagcatgtgctttggacaaggatatagatg |
5351706 |
T |
|
| Q |
101 |
gttttagccatggtgatcttacagaaataggacagagaggacttaacttgagtggagggcaaaagcaaagaattcaattggctagagcagtctacaatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
5351705 |
gttttagccatggtgatcttacagaaataggacagagaggacttaacttgagtggagggcaaaagcaaagaattcaactagctagagcagtctacaatga |
5351606 |
T |
|
| Q |
201 |
tgctgatgt |
209 |
Q |
| |
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||||||||| |
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| T |
5351605 |
tgctgatgt |
5351597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 52 - 207
Target Start/End: Original strand, 15125769 - 15125924
Alignment:
| Q |
52 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
151 |
Q |
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||||||||||| ||||| ||||| |||||||| || |||||||| |||| ||||||||| |||||||||||||||||||| ||||||| ||||| ||| |
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| T |
15125769 |
agatatgagaaagcaattaaagcttgtgctttagataaggatatcgatgattttagccacggtgatcttacagaaataggtgagagagggattaacatga |
15125868 |
T |
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| Q |
152 |
gtggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctgat |
207 |
Q |
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||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||| |
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| T |
15125869 |
gtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgat |
15125924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 5290443 - 5290279
Alignment:
| Q |
52 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
151 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| || || |||||||| ||| ||||||||||||||||||||||||||| || |||||||| ||||| ||| |
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| T |
5290443 |
agatatgagaaagcaatcaaagcttgtgccttagataaggatatcaatgattttagccatggtgatcttacagaaatcggtcagagagggattaacatga |
5290344 |
T |
|
| Q |
152 |
gtggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctgatgtccatctc |
216 |
Q |
| |
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||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||| || ||||| |
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| T |
5290343 |
gtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgatatctatctc |
5290279 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 52 - 207
Target Start/End: Complemental strand, 14949606 - 14949451
Alignment:
| Q |
52 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
151 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||| || |||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||||| ||| |
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| T |
14949606 |
agatatgagaaagcaattaaagcttgtgctttagataaggatatcaatgattttagccatggtgatcttacagaaataggtgagagagggattaacatga |
14949507 |
T |
|
| Q |
152 |
gtggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctgat |
207 |
Q |
| |
|
||||||| ||||||||||| ||||| | ||||||||||||||||||||||||||| |
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|
| T |
14949506 |
gtggaggacaaaagcaaaggattcagcttgctagagcagtctacaatgatgctgat |
14949451 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 5313697 - 5313912
Alignment:
| Q |
1 |
agtggaacaattcgtgataacatactctttggaaaattaatgga-aaggaacagatatgagaatgcaataaaagcatgtgctttggacaaggatatagat |
99 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||| || |||||| || ||| | |||||||||||| || |||| |||||| || || |||||||| ||| |
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| T |
5313697 |
agtggaacagttcgagataatatactctttggcaagccaatggacaaagaaaa-atatgagaatgccattaaagtatgtgccttagataaggatattgat |
5313795 |
T |
|
| Q |
100 |
ggttttagccatggtgatcttacagaaataggacagagaggacttaacttgagtggagggcaaaagcaaagaattcaattggctagagcagtctacaatg |
199 |
Q |
| |
|
| ||||||| |||| ||||||||||||||||| |||||||| ||||| | |||||||| || |||||||| |||||| | ||||||||||||||||||| |
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| T |
5313796 |
gattttagctatggcgatcttacagaaataggtcagagagggattaacgtaagtggaggacagaagcaaaggattcaaatagctagagcagtctacaatg |
5313895 |
T |
|
| Q |
200 |
atgctgatgtccatctc |
216 |
Q |
| |
|
|||||||| || ||||| |
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|
| T |
5313896 |
atgctgatatctatctc |
5313912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 52 - 207
Target Start/End: Complemental strand, 5282856 - 5282701
Alignment:
| Q |
52 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
151 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| || || |||||||| ||| ||| |||||||||||||||||||||||||| |||||||| | || | | |
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| T |
5282856 |
agatatgagaaagcaattaaagcttgtgccttagataaggatatcaatgatttcagccatggtgatcttacagaaataggtcagagagggatcaatataa |
5282757 |
T |
|
| Q |
152 |
gtggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctgat |
207 |
Q |
| |
|
||||||| ||||||||||| |||||| | ||||||||||||||||||||||||||| |
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|
| T |
5282756 |
gtggaggacaaaagcaaaggattcaactagctagagcagtctacaatgatgctgat |
5282701 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 216
Target Start/End: Original strand, 11833226 - 11833390
Alignment:
| Q |
52 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
151 |
Q |
| |
|
||||||||||| ||||| ||||| ||| | || | |||||||| ||| ||||||||||||||||||||||||||| || |||||||| | || | | |
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|
| T |
11833226 |
agatatgagaaagcaattaaagcttgttccttacataaggatatcaatgattttagccatggtgatcttacagaaattggtcagagagggatcaatataa |
11833325 |
T |
|
| Q |
152 |
gtggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctgatgtccatctc |
216 |
Q |
| |
|
||||||| ||||||||||| |||||| | |||||||||||||| |||||||| ||| || ||||| |
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|
| T |
11833326 |
gtggaggacaaaagcaaaggattcaactagctagagcagtctataatgatgcagatatctatctc |
11833390 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 5306552 - 5306704
Alignment:
| Q |
64 |
gcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttgagtggagggcaaa |
163 |
Q |
| |
|
||||| ||||| |||||||| || ||||| | ||| ||| ||||||||||||||||||||||| || |||||||| | || |||||||||| |||| |
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|
| T |
5306552 |
gcaattaaagcttgtgctttagataaggacttcaatgatttcagccatggtgatcttacagaaattggccagagagggatcaatatgagtggaggacaaa |
5306651 |
T |
|
| Q |
164 |
agcaaagaattcaattggctagagcagtctacaatgatgctgatgtccatctc |
216 |
Q |
| |
|
|||| || |||||| | |||||||||||||||| |||||| ||| || ||||| |
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|
| T |
5306652 |
agcagaggattcaactagctagagcagtctacagtgatgcagatatctatctc |
5306704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 31526566 - 31526402
Alignment:
| Q |
52 |
agatatgagaatgcaataaaagcatgtgctttggacaaggatatagatggttttagccatggtgatcttacagaaataggacagagaggacttaacttga |
151 |
Q |
| |
|
|||||||||||||| || ||||| ||||| |||||| | ||||| ||| ||| || ||||||||||||||||||||||| || ||||| ||||| | | |
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|
| T |
31526566 |
agatatgagaatgctattaaagcttgtgccttggacgaagatatcaatgatttgagtcatggtgatcttacagaaataggtcaaagagggattaacctaa |
31526467 |
T |
|
| Q |
152 |
gtggagggcaaaagcaaagaattcaattggctagagcagtctacaatgatgctgatgtccatctc |
216 |
Q |
| |
|
||||||| ||||||||||| |||||| | ||| ||||||| ||||| ||||||||| || ||||| |
|
|
| T |
31526466 |
gtggaggacaaaagcaaaggattcaactagctcgagcagtttacaacgatgctgatatctatctc |
31526402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 11739020 - 11738952
Alignment:
| Q |
109 |
catggtgatcttacagaaataggacagagaggacttaacttgagtggagggcaaaagcaaagaattcaa |
177 |
Q |
| |
|
||||||||||| || ||||| ||| |||||||| ||||||||||||| || ||||||||| |||||||| |
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|
| T |
11739020 |
catggtgatctcactgaaattggagagagaggagttaacttgagtgggggtcaaaagcaacgaattcaa |
11738952 |
T |
|
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