View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9384_low_5 (Length: 530)

Name: NF9384_low_5
Description: NF9384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9384_low_5
NF9384_low_5
[»] chr8 (1 HSPs)
chr8 (19-513)||(34230119-34230615)
[»] chr5 (2 HSPs)
chr5 (26-202)||(1279738-1279921)
chr5 (102-165)||(191959-192021)
[»] chr2 (3 HSPs)
chr2 (25-159)||(19952455-19952591)
chr2 (227-280)||(10181225-10181278)
chr2 (139-192)||(18426150-18426203)
[»] chr3 (5 HSPs)
chr3 (224-280)||(7816266-7816322)
chr3 (100-197)||(43135167-43135264)
chr3 (14-71)||(43136016-43136073)
chr3 (229-277)||(28259502-28259550)
chr3 (100-159)||(37382970-37383029)
[»] chr7 (4 HSPs)
chr7 (100-195)||(14088688-14088783)
chr7 (100-195)||(14398706-14398801)
chr7 (141-204)||(25491775-25491838)
chr7 (243-280)||(32576081-32576118)
[»] chr1 (2 HSPs)
chr1 (221-280)||(3117441-3117500)
chr1 (100-153)||(26273628-26273681)
[»] scaffold0092 (1 HSPs)
scaffold0092 (99-193)||(46395-46489)


Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 513
Target Start/End: Original strand, 34230119 - 34230615
Alignment:
Q  19 gagatgagagagaggcagggagctgaagaagaagaaagtgtttctgctgtacgcacgtgtgagaaattttaaaattttccattttttaagtgggtcaatg 118  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||  |||||||||||||||||||||||||||||||| ||||||| ||    
T  34230119 gagatgagagagaagcagggagctgaagaagaagaaagtgtttctgttgtacacatatgtgagaaattttaaaattttccattttttaaatgggtcagtg 34230218  T
Q  119 ggctataaggttgggtcatatataaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtggaaccacccatgattccaactaggtc 218  Q
    |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34230219 ggctattaggttgggtcatatataaagaaagtatcaattgagcccgggcgaatgttcgaggtcgccaggtggtggaaccacccatgattccaactaggtc 34230318  T
Q  219 agcacccctagaaccacaaatctcttacaagtatactcaaaaatttattaataaaagagaaacaatttaaattgatttaaaatagttatataacagtttt 318  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34230319 agcacccctaaaaccacaaatctcttacaagtatactcaaaaatctattaataaaagagaaacaatttaaattgatttaaaacagttatataacagtttt 34230418  T
Q  319 gttttgttattttaaggaagttatagaataattattattgcccttttttaacaatgagggccaaagtcc-ttttctttaataataattttacttcatgtt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||    
T  34230419 gttttgttattttaaggaagttatagaataattattattgcccttttttaacaatgaggaccaaagtcctttttttttaataataattttacttcatgtt 34230518  T
Q  418 nnnnnnnngtcactcttcccaannnnnnnaaacaaaatttatatattg-aatattatccccaaaattacctgtcctttgtgtgggatgatagatttg 513  Q
             | |||||||||||       ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34230519 aaaaaaaaattactcttcccaatttttttaaacaaaatttatatattgtaatattatccccaaaattacctgtcctttgtgtgggatgatagatttg 34230615  T

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Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 1279921 - 1279738
Alignment:
Q  26 gagagaggcagggagctgaagaagaagaaagtgtttctgctgtacgcacgtgtgagaaattttaaaattttcc--atttttt-----aagtgggtcaatg 118  Q
    ||||||||||| ||||||||||||||||| |||||| || ||| ||| | |||||||||||| | ||||| ||  |||||||     | |||||| ||||    
T  1279921 gagagaggcagagagctgaagaagaagaatgtgtttatgttgtgcgcgcatgtgagaaatttcagaatttgcccaattttttttgttaggtgggttaatg 1279822  T
Q  119 ggctataaggttgggtcatatataaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtggaaccaccca 202  Q
    ||||||   |||||||||||||||||||||||||| |||||  |||| | |||||  ||||||||  |||||||||||| ||||    
T  1279821 ggctattgagttgggtcatatataaagaaagtatcgattgagtccgggcaaatgtctgaggtcgctgggtggtggaaccgccca 1279738  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 192021 - 191959
Alignment:
Q  102 ttttaagtgggtcaatgggctataaggttgggtcatatataaagaaagtatcaattgaacccgg 165  Q
    |||||||||||| ||||||||||  ||||| ||||||||||||||||||| | |||||||||||    
T  192021 ttttaagtgggttaatgggctatt-ggttgtgtcatatataaagaaagtaccgattgaacccgg 191959  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 19952455 - 19952591
Alignment:
Q  25 agagagaggcagggagctgaagaagaagaaagtgtttctgctgtacgcacgtgtgagaaattttaaaattttcc----attttttaagtgggtcaatggg 120  Q
    |||||||||||| ||| ||||||||||||| ||||||||| |||  || |||||||||||||||| ||||| ||     |||||||| ||||| ||||||    
T  19952455 agagagaggcagagagttgaagaagaagaacgtgtttctgttgt--gcgcgtgtgagaaattttagaatttgcctaattttttttaattgggttaatggg 19952552  T
Q  121 ctataaggttgggtcatatataaagaaagtatcaattga 159  Q
    ||||   | ||||||||||||||||||| |||| |||||    
T  19952553 ctattgaggtgggtcatatataaagaaaatatcgattga 19952591  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 10181278 - 10181225
Alignment:
Q  227 tagaaccacaaatctcttacaagtatactcaaaaatttattaataaaagagaaa 280  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||    
T  10181278 tagaaccacaaatcttttacaagtatactgaaaaatttattaacaaaagagaaa 10181225  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 192
Target Start/End: Original strand, 18426150 - 18426203
Alignment:
Q  139 tataaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtg 192  Q
    ||||||||||||||| ||||| ||||||| ||||| || ||| |||||||||||    
T  18426150 tataaagaaagtatcgattgagcccggacaaatgtccggggtagccaggtggtg 18426203  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 224 - 280
Target Start/End: Original strand, 7816266 - 7816322
Alignment:
Q  224 ccctagaaccacaaatctcttacaagtatactcaaaaatttattaataaaagagaaa 280  Q
    ||||||||||||||||| |||||||| ||||| ||||||||| ||||||||||||||    
T  7816266 ccctagaaccacaaatcccttacaagcatactgaaaaatttaataataaaagagaaa 7816322  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 197
Target Start/End: Complemental strand, 43135264 - 43135167
Alignment:
Q  100 ttttttaagtgggtcaatgggctataaggttgggtcatatataaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtggaacc 197  Q
    |||||||||||||| ||||| ||||    ||||| ||||||||||||||||||| ||||| |  |||||||||| |  ||||||||| ||||||||||    
T  43135264 ttttttaagtgggttaatggactattgcattgggccatatataaagaaagtatcgattgagcttggacgaatgtccagggtcgccagatggtggaacc 43135167  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 43136073 - 43136016
Alignment:
Q  14 gagcagagatgagagagaggcagggagctgaagaagaagaaagtgtttctgctgtacg 71  Q
    |||| |||| ||||||||||||| ||||||||||||||||| ||||||||| ||||||    
T  43136073 gagctgagacgagagagaggcagagagctgaagaagaagaatgtgtttctgttgtacg 43136016  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 277
Target Start/End: Complemental strand, 28259550 - 28259502
Alignment:
Q  229 gaaccacaaatctcttacaagtatactcaaaaatttattaataaaagag 277  Q
    |||||||||||||| |||||  | |||||||||||||||||||||||||    
T  28259550 gaaccacaaatctcatacaaccacactcaaaaatttattaataaaagag 28259502  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 159
Target Start/End: Original strand, 37382970 - 37383029
Alignment:
Q  100 ttttttaagtgggtcaatgggctataaggttgggtcatatataaagaaagtatcaattga 159  Q
    |||||||||||||| ||||||||||  ||||||  |||||||| |||||||||| |||||    
T  37382970 ttttttaagtgggttaatgggctattgggttggaccatatatacagaaagtatcgattga 37383029  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 14088783 - 14088688
Alignment:
Q  100 ttttttaagtgggtcaatgggctataaggttgggtcatatataaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtggaa 195  Q
    |||||| ||||||| |||||||||   ||||| | ||||||||||||||||||| ||||| ||||| | | ||  || ||||||| ||||||||||    
T  14088783 ttttttgagtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtggaa 14088688  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 14398801 - 14398706
Alignment:
Q  100 ttttttaagtgggtcaatgggctataaggttgggtcatatataaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtggaa 195  Q
    |||||| ||||||| |||||||||   ||||| | ||||||||||||||||||| ||||| ||||| | | ||  || ||||||| ||||||||||    
T  14398801 ttttttgagtgggttaatgggctaatgggttgagccatatataaagaaagtatcgattgagcccgggcaagtgcccggggtcgccgggtggtggaa 14398706  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 25491775 - 25491838
Alignment:
Q  141 taaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtggaaccacccatg 204  Q
    ||||||||||||| |||||  |||| ||| |||  ||||||||| |||||||||||||||||||    
T  25491775 taaagaaagtatcgattgagtccgggcgagtgtctgaggtcgccgggtggtggaaccacccatg 25491838  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 280
Target Start/End: Complemental strand, 32576118 - 32576081
Alignment:
Q  243 ttacaagtatactcaaaaatttattaataaaagagaaa 280  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  32576118 ttacaagtatacacaacaatttattaataaaagagaaa 32576081  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 221 - 280
Target Start/End: Complemental strand, 3117500 - 3117441
Alignment:
Q  221 cacccctagaaccacaaatctcttacaagtatactcaaaaatttattaataaaagagaaa 280  Q
    |||||||||||||||| ||| ||||| || || || ||||| ||||||||||||||||||    
T  3117500 cacccctagaaccacagatcccttaccagcattctaaaaaaattattaataaaagagaaa 3117441  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 26273628 - 26273681
Alignment:
Q  100 ttttttaagtgggtcaatgggctataaggttgggtcatatataaagaaagtatc 153  Q
    |||||||||| ||| ||| ||||||  ||||||| |||||||||||||||||||    
T  26273628 ttttttaagttggttaattggctattgggttgggccatatataaagaaagtatc 26273681  T

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Target: scaffold0092 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 46395 - 46489
Alignment:
Q  99 attttttaagtgggtcaatgggctataaggttgggtcatatataaagaaagtatcaattgaacccggacgaatgttcgaggtcgccaggtggtgg 193  Q
    ||||||||||||||| ||||  ||||  |||||||  | |||||||||||||||| ||||| ||||| | ||||  || |||| |||||||||||    
T  46395 attttttaagtgggttaatgaactatttggttgggcaaaatataaagaaagtatcgattgagcccgggcaaatgcccggggtcaccaggtggtgg 46489  T

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