View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9384_low_8 (Length: 365)

Name: NF9384_low_8
Description: NF9384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9384_low_8
NF9384_low_8
[»] chr7 (7 HSPs)
chr7 (19-149)||(9371572-9371702)
chr7 (19-149)||(6472468-6472611)
chr7 (52-148)||(21358262-21358358)
chr7 (52-140)||(35013245-35013333)
chr7 (19-51)||(21358213-21358245)
chr7 (308-350)||(33865610-33865651)
chr7 (19-51)||(35013199-35013231)
[»] chr5 (8 HSPs)
chr5 (19-149)||(32863401-32863543)
chr5 (19-213)||(3173850-3174059)
chr5 (19-149)||(10572455-10572598)
chr5 (60-134)||(41959231-41959305)
chr5 (308-353)||(30441314-30441359)
chr5 (60-136)||(43299993-43300069)
chr5 (168-213)||(18740035-18740081)
chr5 (165-213)||(32863333-32863383)
[»] chr1 (10 HSPs)
chr1 (52-148)||(26014279-26014375)
chr1 (19-149)||(29599475-29599618)
chr1 (19-149)||(48183991-48184134)
chr1 (52-149)||(26354756-26354853)
chr1 (19-140)||(324441-324574)
chr1 (308-352)||(28549377-28549421)
chr1 (308-352)||(41866997-41867041)
chr1 (167-213)||(26354696-26354743)
chr1 (20-49)||(26014391-26014420)
chr1 (165-200)||(26014229-26014265)
[»] chr4 (12 HSPs)
chr4 (19-149)||(8433204-8433347)
chr4 (19-146)||(25808862-25809002)
chr4 (52-146)||(46164636-46164730)
chr4 (19-122)||(21604205-21604321)
chr4 (52-148)||(47825658-47825758)
chr4 (78-147)||(54785486-54785555)
chr4 (308-352)||(34703780-34703824)
chr4 (165-213)||(8433367-8433416)
chr4 (169-213)||(23218585-23218628)
chr4 (57-147)||(23218474-23218564)
chr4 (165-213)||(47825592-47825640)
chr4 (19-51)||(46164590-46164622)
[»] chr3 (4 HSPs)
chr3 (19-148)||(9456167-9456309)
chr3 (310-352)||(50831196-50831238)
chr3 (310-352)||(50844615-50844657)
chr3 (308-352)||(23217065-23217108)
[»] chr8 (10 HSPs)
chr8 (52-149)||(27576513-27576610)
chr8 (19-149)||(22432515-22432659)
chr8 (19-140)||(18068341-18068470)
chr8 (58-113)||(6786239-6786294)
chr8 (52-146)||(774952-775046)
chr8 (52-146)||(780606-780700)
chr8 (19-51)||(27576626-27576658)
chr8 (19-51)||(29182799-29182831)
chr8 (52-90)||(787884-787922)
chr8 (57-147)||(16658595-16658685)
[»] chr6 (5 HSPs)
chr6 (19-146)||(16497401-16497541)
chr6 (52-148)||(32396985-32397080)
chr6 (308-352)||(11074875-11074918)
chr6 (165-215)||(16497556-16497608)
chr6 (167-213)||(14125096-14125143)
[»] chr2 (2 HSPs)
chr2 (19-149)||(25697791-25697935)
chr2 (57-106)||(38978627-38978676)


Alignment Details
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 9371702 - 9371572
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaaggcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaa 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9371702 gttgttcggtggttttgctttggctgggagaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaa 9371603  T
Q  119 gggcattatagtaatttccagtatataaata 149  Q
    |||||||||||||||||||||| ||||||||    
T  9371602 gggcattatagtaatttccagtgtataaata 9371572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 6472468 - 6472611
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatat 105  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6472468 gttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatat 6472567  T
Q  106 tcatattagttaagggcattatagtaatttccagtatataaata 149  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  6472568 tcatattagttaagggcattatagtaatttccagtgtataaata 6472611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 21358262 - 21358358
Alignment:
Q  52 gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataaat 148  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21358262 gcgcatcagatgaaagagaaaggggaaaaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataaat 21358358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 52 - 140
Target Start/End: Original strand, 35013245 - 35013333
Alignment:
Q  52 gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagt 140  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35013245 gcgcatcagatgaaagagaaaggggaaaaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagt 35013333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 21358213 - 21358245
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag 51  Q
    |||||||||||||||||||||||||||||||||    
T  21358213 gttgttcggtggttttgctttggctgggagaag 21358245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 33865610 - 33865651
Alignment:
Q  308 aatcctaatgtacaatgcacacaacacctataaaaccctaatc 350  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  33865610 aatcctaatgtacaatgcacacaagaccta-aaaaccctaatc 33865651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 35013199 - 35013231
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag 51  Q
    ||||||||||||||||||||| |||||||||||    
T  35013199 gttgttcggtggttttgctttcgctgggagaag 35013231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 8e-46; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 32863543 - 32863401
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatatt 106  Q
    |||||||||||||||||||||||||||||||||            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  32863543 gttgttcggtggttttgctttggctgggagaagaaaaaaaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatatt 32863444  T
Q  107 catattagttaagggcattatagtaatttccagtatataaata 149  Q
    |||||||||||||||||||||||||||||||||| ||||||||    
T  32863443 catattagttaagggcattatagtaatttccagtgtataaata 32863401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 3174059 - 3173850
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatat 105  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3174059 gttgttcggtggttttgctttggctgggagaagaaaaaagaggaatgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatat 3173960  T
Q  106 tcatattagttaagggcattatagtaatttccagtatataaata-nnnnnnnnnnnnnnnagagatggggtggcggtggct-ccccttgccacccccagt 203  Q
    ||||||||||||||||||||||||||||||||||| ||||||||                ||||||||||||||||||||| ||||||||||||||||||    
T  3173959 tcatattagttaagggcattatagtaatttccagtgtataaatatattttattttattttagagatggggtggcggtggctcccccttgccacccccagt 3173860  T
Q  204 tccaccactg 213  Q
    ||| ||||||    
T  3173859 tccgccactg 3173850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 10572598 - 10572455
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatat 105  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10572598 gttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatat 10572499  T
Q  106 tcatattagttaagggcattatagtaatttccagtatataaata 149  Q
    || |||||||||||||||||||||||||||||||| ||||||||    
T  10572498 tcgtattagttaagggcattatagtaatttccagtgtataaata 10572455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 41959231 - 41959305
Alignment:
Q  60 gatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatt 134  Q
    ||||| |||||||||| ||||||||||||| | ||||||| |||| |||||||| ||||||| || |||||||||    
T  41959231 gatgaaagagaaagggaaagaggaaatgaagtagaattgggaatactcatattacttaagggtataatagtaatt 41959305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 30441359 - 30441314
Alignment:
Q  308 aatcctaatgtacaatgcacacaacacctataaaaccctaatccta 353  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  30441359 aatcctaatgtacaatgcacacaacacctctaaaaccctaaaccta 30441314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 43300069 - 43299993
Alignment:
Q  60 gatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttc 136  Q
    ||||| |||||||||| ||||||||||||| | ||||||| | || |||||||| | ||||| || |||||||||||    
T  43300069 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatattactgaagggtataatagtaatttc 43299993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 18740035 - 18740081
Alignment:
Q  168 gatggggtggcggtggct-ccccttgccacccccagttccaccactg 213  Q
    |||||||||||||||||| |||||||||| |||||||||| ||||||    
T  18740035 gatggggtggcggtggctcccccttgccaaccccagttccgccactg 18740081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 32863383 - 32863333
Alignment:
Q  165 agagatggggtggcggtggct-ccccttgcca-cccccagttccaccactg 213  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| ||||||    
T  32863383 agagatggggtggcggtggctcccccttgccaccccccagttccgccactg 32863333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 26014375 - 26014279
Alignment:
Q  52 gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataaat 148  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  26014375 gcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataaat 26014279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 29599475 - 29599618
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatat 105  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29599475 gttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatat 29599574  T
Q  106 tcatattagttaagggcattatagtaatttccagtatataaata 149  Q
    |||||||||||||||||||||||| |||||||||| ||||||||    
T  29599575 tcatattagttaagggcattataggaatttccagtgtataaata 29599618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 48184134 - 48183991
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatat 105  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48184134 gttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatat 48184035  T
Q  106 tcatattagttaagggcattatagtaatttccagtatataaata 149  Q
    |||||||| |||||||||||||||||||||||||| ||||||||    
T  48184034 tcatattaattaagggcattatagtaatttccagtgtataaata 48183991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 26354853 - 26354756
Alignment:
Q  52 gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataaata 149  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||    
T  26354853 gcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattaataaagggcattgtagtaatttccagtgtataaata 26354756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 324574 - 324441
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatat 105  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  324574 gttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaagaaatgaaattgaattggt-atat 324476  T
Q  106 tcatattagttaagggcattatagtaatttccagt 140  Q
    |||||||||||||||||||||||||||||||||||    
T  324475 tcatattagttaagggcattatagtaatttccagt 324441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 28549421 - 28549377
Alignment:
Q  308 aatcctaatgtacaatgcacacaacacctataaaaccctaatcct 352  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  28549421 aatcctaatgtacaatgcacacaagacctaaaaaaccctaatcct 28549377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 41866997 - 41867041
Alignment:
Q  308 aatcctaatgtacaatgcacacaacacctataaaaccctaatcct 352  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  41866997 aatcctaatgtacaatgcacacaagacctaaaaaaccctaatcct 41867041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 26354743 - 26354696
Alignment:
Q  167 agatggggtggcggtggct-ccccttgccacccccagttccaccactg 213  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||||||    
T  26354743 agatggggtggcggtggctcccccttgccacctccagttccgccactg 26354696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 26014420 - 26014391
Alignment:
Q  20 ttgttcggtggttttgctttggctgggaga 49  Q
    ||||||||||||||||||||||||||||||    
T  26014420 ttgttcggtggttttgctttggctgggaga 26014391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 200
Target Start/End: Complemental strand, 26014265 - 26014229
Alignment:
Q  165 agagatggggtggcggtggct-ccccttgccaccccc 200  Q
    ||||||||||||||||||||| |||||||||||||||    
T  26014265 agagatggggtggcggtggctcccccttgccaccccc 26014229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 8433204 - 8433347
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatat 105  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8433204 gttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatat 8433303  T
Q  106 tcatattagttaagggcattatagtaatttccagtatataaata 149  Q
    |||||||||||||||||||||||||| |||||||| ||||||||    
T  8433304 tcatattagttaagggcattatagtagtttccagtgtataaata 8433347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 25808862 - 25809002
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatat 105  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25808862 gttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatat 25808961  T
Q  106 tcatattagttaagggcattatagtaatttccagtatataa 146  Q
    ||||||||||||||||||||||||||| ||||||| |||||    
T  25808962 tcatattagttaagggcattatagtaaattccagtgtataa 25809002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 46164636 - 46164730
Alignment:
Q  52 gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataa 146  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  46164636 gcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttcgagtgtataa 46164730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 122
Target Start/End: Complemental strand, 21604321 - 21604205
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatat 105  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21604321 gttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatat 21604222  T
Q  106 tcatattagttaagggc 122  Q
    |||||||||||||||||    
T  21604221 tcatattagttaagggc 21604205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 47825758 - 47825658
Alignment:
Q  52 gcgcatcagatgagagagaaaggggaa----gaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataaa 147  Q
    ||||||||||||| ||||||||| |||    || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  47825758 gcgcatcagatgaaagagaaaggagaaaggagatgaaatgaaattgaattggtaatattcatattaattaagggcattatagtaatttccagtatataaa 47825659  T
Q  148 t 148  Q
    |    
T  47825658 t 47825658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 78 - 147
Target Start/End: Original strand, 54785486 - 54785555
Alignment:
Q  78 agaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataaa 147  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||  ||||||||  |||||||||    
T  54785486 agaggaaatgaaattgaattggtaatattcatattagcgaagggcattacggtaatttcaggtatataaa 54785555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 34703780 - 34703824
Alignment:
Q  308 aatcctaatgtacaatgcacacaacacctataaaaccctaatcct 352  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  34703780 aatcctaatgtacaatgcacacaagacctaaaaaaccctaatcct 34703824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 213
Target Start/End: Original strand, 8433367 - 8433416
Alignment:
Q  165 agagatggggtggcggtggct-ccccttgccacccccagttccaccactg 213  Q
    ||||||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  8433367 agagatggggtggcggtggctcccccttgccacccccggttccgccactg 8433416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 23218585 - 23218628
Alignment:
Q  169 atggggtggcggtggctccccttgccacccccagttccaccactg 213  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||    
T  23218585 atggggtggcggtggctcccc-tgccacccccagttccgccactg 23218628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 23218474 - 23218564
Alignment:
Q  57 tcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataaa 147  Q
    |||||||| ||||||| ||||||||||||||| | ||||| || ||||||  || || | ||||  ||| | |||||||||||||||||||    
T  23218474 tcagatgaaagagaaacgggaagaggaaatgagactgaataggaaatattagtactattgaaggatatttttgtaatttccagtatataaa 23218564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 47825640 - 47825592
Alignment:
Q  165 agagatggggtggcggtggct-ccccttgccacccccagttccaccactg 213  Q
    ||||||||||||||||||||| |||||||||| ||||||||||| |||||    
T  47825640 agagatggggtggcggtggctcccccttgcca-ccccagttccatcactg 47825592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 46164590 - 46164622
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag 51  Q
    |||||||||| ||||||||||||||||||||||    
T  46164590 gttgttcggtagttttgctttggctgggagaag 46164622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 9456309 - 9456167
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatat 105  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9456309 gttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatat 9456210  T
Q  106 tcatattagttaagggcattatagtaatttccagtatataaat 148  Q
    |||||||| |||||||||||||||||||||||||| |||||||    
T  9456209 tcatattaattaagggcattatagtaatttccagtgtataaat 9456167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 352
Target Start/End: Complemental strand, 50831238 - 50831196
Alignment:
Q  310 tcctaatgtacaatgcacacaacacctataaaaccctaatcct 352  Q
    |||||||||||||| |||||||||| || ||||||||||||||    
T  50831238 tcctaatgtacaatacacacaacacttaaaaaaccctaatcct 50831196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 352
Target Start/End: Original strand, 50844615 - 50844657
Alignment:
Q  310 tcctaatgtacaatgcacacaacacctataaaaccctaatcct 352  Q
    |||||||||||||| |||||||||| || ||||||||||||||    
T  50844615 tcctaatgtacaatacacacaacacttaaaaaaccctaatcct 50844657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 23217108 - 23217065
Alignment:
Q  308 aatcctaatgtacaatgcacacaacacctataaaaccctaatcct 352  Q
    ||||||||||||||||||||| || ||||| ||||||||||||||    
T  23217108 aatcctaatgtacaatgcacagaagaccta-aaaaccctaatcct 23217065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 27576610 - 27576513
Alignment:
Q  52 gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataaata 149  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  27576610 gcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatattaattaagggcattatagtaatttccagtgtataaata 27576513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 22432515 - 22432659
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag-------------gcgcatcagatgaga-gagaaaggggaagaggaaatgaaattgaattggtaata 104  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  22432515 gttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaaagagaaaggggaagaggaaatgaaattgaattggtaata 22432614  T
Q  105 ttcatattagttaagggcattatagtaatttccagtatataaata 149  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||    
T  22432615 ttcatattagttaagggcattaaagtaatttccagtgtataaata 22432659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 18068470 - 18068341
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag------gcgcatc--agatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcata 110  Q
    |||||||||||||||||||||||||||||||||      | | | |  |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18068470 gttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcata 18068371  T
Q  111 ttagttaagggcattatagtaatttccagt 140  Q
    ||| ||||||||||||||||||||||||||    
T  18068370 ttaattaagggcattatagtaatttccagt 18068341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 6786294 - 6786239
Alignment:
Q  58 cagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 113  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||    
T  6786294 cagatgaaagagaaaggggaagagaaaatgaaattgaattggtaatattcatatta 6786239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 774952 - 775046
Alignment:
Q  52 gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataa 146  Q
    |||||||||||   || |||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||  |||||||||| || |||||    
T  774952 gcgcatcagattgaagggaaaggggaagaggaaatgaaattgaattggtaatattgatattaataaagggtattgaagtaatttcctgtgtataa 775046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 52 - 146
Target Start/End: Original strand, 780606 - 780700
Alignment:
Q  52 gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataa 146  Q
    |||||||||||   || |||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||  |||||||||| || |||||    
T  780606 gcgcatcagattgaagggaaaggggaagaggaaatgaaattgaattggtaatattgatattaataaagggtattgaagtaatttcctgtgtataa 780700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 27576658 - 27576626
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag 51  Q
    |||||||||||||||||||||||||||||||||    
T  27576658 gttgttcggtggttttgctttggctgggagaag 27576626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 29182799 - 29182831
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag 51  Q
    |||||||||||||||||||||||||||||||||    
T  29182799 gttgttcggtggttttgctttggctgggagaag 29182831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 787884 - 787922
Alignment:
Q  52 gcgcatcagatgagagagaaaggggaagaggaaatgaaa 90  Q
    ||||||||||||| || ||||||||||||||||||||||    
T  787884 gcgcatcagatgaaagtgaaaggggaagaggaaatgaaa 787922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 147
Target Start/End: Complemental strand, 16658685 - 16658595
Alignment:
Q  57 tcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataaa 147  Q
    |||||||| ||||||| ||||||||||||||| | ||||| || ||||||  || || | ||||  ||| | |||||||||||||||||||    
T  16658685 tcagatgaaagagaaacgggaagaggaaatgagactgaataggaaatattagtactattgaaggatatttttgtaatttccagtatataaa 16658595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 16497401 - 16497541
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag-------------gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatat 105  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  16497401 gttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatat 16497500  T
Q  106 tcatattagttaagggcattatagtaatttccagtatataa 146  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  16497501 tcatattagttaagggcattatagtaattttcagtgtataa 16497541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 32397080 - 32396985
Alignment:
Q  52 gcgcatcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtatataaat 148  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||| | ||||||||| ||||||||||| || |||||||    
T  32397080 gcgcatcagatgaaagagaa-ggggaagaggaaatgaaattgaattggtaacattcatattaataaagggcattgtagtaatttcctgtgtataaat 32396985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 11074875 - 11074918
Alignment:
Q  308 aatcctaatgtacaatgcacacaacacctataaaaccctaatcct 352  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||    
T  11074875 aatcctaatgtacaatgcacacaagaccta-aaaaccctaatcct 11074918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Original strand, 16497556 - 16497608
Alignment:
Q  165 agagatggggtggcggtggct-ccccttgccacccc-cagttccaccactggt 215  Q
    ||||||||||||||||||||| |||||||||||||| ||||||| ||||||||    
T  16497556 agagatggggtggcggtggctcccccttgccaccccgcagttccgccactggt 16497608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 213
Target Start/End: Original strand, 14125096 - 14125143
Alignment:
Q  167 agatggggtggcggtggctcccc-ttgccacccccagttccaccactg 213  Q
    ||||||||| ||||||||||||| ||||||||||||||||| ||||||    
T  14125096 agatggggtagcggtggctcccccttgccacccccagttccgccactg 14125143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 25697791 - 25697935
Alignment:
Q  19 gttgttcggtggttttgctttggctgggagaag-------------gcgcatcagatgaga-gagaaaggggaagaggaaatgaaattgaattggtaata 104  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  25697791 gttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaaagagaaaggggaagaggaaatgaaattgaattggtaata 25697890  T
Q  105 ttcatattagttaagggcattatagtaatttccagtatataaata 149  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  25697891 ttcatattagttaagggcattatagtaatttccagtgtataaata 25697935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 38978627 - 38978676
Alignment:
Q  57 tcagatgagagagaaaggggaagaggaaatgaaattgaattggtaatatt 106  Q
    |||||||| ||||||| ||||||||||||||||| ||||| || ||||||    
T  38978627 tcagatgaaagagaaacgggaagaggaaatgaaactgaataggaaatatt 38978676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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