View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9385_low_2 (Length: 323)
Name: NF9385_low_2
Description: NF9385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9385_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 3 - 306
Target Start/End: Original strand, 30524940 - 30525240
Alignment:
| Q |
3 |
cgagtttcgtgttacggatgtttctgttttctgtgtggggaagacgtgtacagttgaagggaagacaaatagaaataattgggcatatgtttggaggggg |
102 |
Q |
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|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30524940 |
cgagttccgtattacggatgtttctgttttctgtgtggggaagacgtgtacagttgaagggaagacaaatagaaataattgggcatatgtttggatgggg |
30525039 |
T |
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| Q |
103 |
tatatgaattgacctaaccacttgtgatacaatttgtgtgattttgtgttgttgtatgaatggacggggtttacctcttgagcatctcatgttctcctcc |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30525040 |
tatatgaattgacctaaccacttgtgatacaatttgtgtgattttgtgttgttgtatgaatggacggggtttacctcttgagcatctcatgtt---ctcc |
30525136 |
T |
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| Q |
203 |
gacttttgttagtgagtaatgttaagttggttttgaagtagtttgtagtttgttatttgctctatattgtttaggttctagtgctgtttagtgtataaat |
302 |
Q |
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||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |
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| T |
30525137 |
gacttttgttagtcagtaatgttaagttgcttttgaagttgtttgtagtttgttatttgctctacattatttaggttctagtgttgtttagtgtataaat |
30525236 |
T |
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| Q |
303 |
atgt |
306 |
Q |
| |
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|||| |
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| T |
30525237 |
atgt |
30525240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 5473277 - 5473322
Alignment:
| Q |
226 |
aagttggttttgaagtagtttgtagtttgttatttgctctatattg |
271 |
Q |
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|||||||||||||||| ||||||||||||||||||| | ||||||| |
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| T |
5473277 |
aagttggttttgaagttgtttgtagtttgttatttgttatatattg |
5473322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 261
Target Start/End: Original strand, 1460397 - 1460432
Alignment:
| Q |
226 |
aagttggttttgaagtagtttgtagtttgttatttg |
261 |
Q |
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| T |
1460397 |
aagttggttttgaagttgtttgtagtttgttatttg |
1460432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 261
Target Start/End: Original strand, 30602341 - 30602376
Alignment:
| Q |
226 |
aagttggttttgaagtagtttgtagtttgttatttg |
261 |
Q |
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|||||||||||||||| ||||||||||||||||||| |
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| T |
30602341 |
aagttggttttgaagttgtttgtagtttgttatttg |
30602376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 259
Target Start/End: Original strand, 22312207 - 22312240
Alignment:
| Q |
226 |
aagttggttttgaagtagtttgtagtttgttatt |
259 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
22312207 |
aagttggttttgaagttgtttgtagtttgttatt |
22312240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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